Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

63096829 .. 63097487

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGTTAATGACTGCAAATAATGATGCTCAAGTTCGAGTTTTTGACGTTGAAAAGTTTGCTTGCGTCAACTGCTTCTCCTTGGAATGGTCTGTAAATAACACTTCTGTTAGTCCCGATGGTAAGCTGCTCGCAGTACTTGGTGATGGTGCAGACGGTTTGATAGCTGATGCTCAGTCTGGAAAAGCTGTCGGGGGCCTGAAAGGGCACTTAGACTATTGCTTTTCCTCAGCTTGGCACCCGGATGGGCAAATCTTAGCTACTGGGAGCCAAGACGCTACTTGCAGGTTATGGGACATAAGGAACCTGTCAGAGTCCCTAGTCGTGTTGAAGGGAAGAATGGGAGCAGTAAGGGCTATAAAATTCACCTCTGATGGTCGTTTTATGGCCATGGCTGAGCCAGCAGACTTTGTTCACATCATTGATACCCAGTCCGGATATGCAAAGGAGCCAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

153

Amino Acids

16.53

Weight (kDa)

5.29

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	2 - 105	1.9e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	3 - 64	1.1e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	3 - 146	4.2e-20	WDR5 beta-propeller domain
WD40_Prp19	PF24814	3 - 142	3.6e-17	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	3 - 146	3.1e-16	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	3 - 132	2.7e-12	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	3 - 123	1.5e-11	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	3 - 137	1.8e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	3 - 106	2e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	5 - 131	2.5e-12	WDR3 first beta-propeller domain
Beta-prop_IFT122_1st	PF23381	29 - 101	3.3e-06	IFT122 first beta-propeller
WDR55	PF24796	30 - 144	1.7e-06	WDR55
Beta-prop_THOC3	PF25174	56 - 146	2e-17	THOC3 beta-propeller domain
EIF3I	PF24805	59 - 132	1e-05	EIF3I
WD40	PF00400	62 - 99	3.6e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	87, 234
AgsI	TTSAA	2 cut(s)	53, 331
AluBI	AGCT	5 cut(s)	127, 167, 188, 233, 260
AluI	AGCT	5 cut(s)	127, 167, 188, 233, 260
Alw26I	GTCTC	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	2 cut(s)	196, 387
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	155, 358
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	4 cut(s)	113, 140, 239, 368
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	276
BisI	GCNGC	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	5 cut(s)	197, 239, 269, 305, 450
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	2 cut(s)	273, 424
BmsI	GCATC	2 cut(s)	16, 160
BmuI	ACTGGG	2 cut(s)	273, 424
Bpu10I	CCTNAGC	1 cut(s)	229
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	81, 390
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 234
Bse1I	ACTGG	2 cut(s)	268, 430
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	81, 390
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	87, 234
BseMII	CTCAG	3 cut(s)	188, 243, 387
BseNI	ACTGG	2 cut(s)	268, 430
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	198, 389
BshNI	GGYRCC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	242, 435
BslFI	GGGAC	3 cut(s)	99, 301, 308
BslI	CCNNNNNNNGG	2 cut(s)	87, 234
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	3 cut(s)	99, 301, 308
BsnI	GGCC	2 cut(s)	198, 389
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp13I	TCCGGA	1 cut(s)	434
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	2 cut(s)	198, 389
BspCNI	CTCAG	3 cut(s)	187, 242, 388
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	5 cut(s)	197, 239, 269, 305, 450
BspMI	ACCTGC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	268, 430
BssECI	CCNNGG	2 cut(s)	81, 390
BssT1I	CCWWGG	2 cut(s)	81, 390
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	64, 132, 402
BstDEI	CTNAG	5 cut(s)	174, 211, 229, 256, 396
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 353, 401
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	198, 389
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	64, 132, 402
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	2 cut(s)	55, 284
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	5 cut(s)	174, 211, 229, 256, 396
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	81, 390
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	81, 390
ErhI	CCWWGG	2 cut(s)	81, 390
FaeI	CATG	1 cut(s)	394
FaiI	YATR	6 cut(s)	292, 299, 359, 386, 392, 441
FaqI	GGGAC	3 cut(s)	99, 301, 308
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	198, 389
HapII	CCGG	2 cut(s)	242, 435
HgaI	GACGC	2 cut(s)	55, 284
Hin1II	CATG	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	242, 435
HphI	GGTGA	2 cut(s)	155, 358
Hpy166II	GTNNAC	2 cut(s)	70, 415
Hpy188I	TCNGA	2 cut(s)	313, 373
Hpy188III	TCNNGA	3 cut(s)	116, 180, 435
Hpy8I	GTNNAC	2 cut(s)	70, 415
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	17, 152, 285, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 353, 401
HpyF3I	CTNAG	5 cut(s)	174, 211, 229, 256, 396
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	394
Kpn2I	TCCGGA	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	267, 344, 448
LpnPI	CCDG	9 cut(s)	165, 212, 249, 255, 271, 320, 414, 443, 448
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	16, 160
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	48
MboII	GAAGA	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	2 cut(s)	238, 379
Mox20I	TGGCCA	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	2 cut(s)	242, 435
MspR9I	CCNGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	72, 353, 401
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	390
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	5 cut(s)	197, 239, 269, 305, 450
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspN4I	GGNNCC	5 cut(s)	197, 239, 269, 305, 450
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	16, 160
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	362
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	81, 390
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	362
TatI	WGTACW	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseI	GCWGC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	362
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.