Rw7G040440

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001698
Physical Location & Seq
Reverse (-)
62996643 .. 62999953
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040440.1

Sequence Viewer

Length: 648 bp
ATGTTCATTCCTTCAAGTGGCGACGCTTTTGCTGATAACCACCCACAGCGAAGCCGCGAGGTCGTAGACGACGACTCCGACGACTTTGTAGACGACCTTGATTCGTTACAGAGCAAGATGAAGACTGATACTTCGGCTTTGGAAGCTAGAAATGTAAAAGACATACAGGGAATACCATGGGAGAGGCTTAATTTCACCAGAGATAAGTACAATGAAGAGTGCTTGCAAGTGGAAAAGGGGAAGAGTTTCTATGACTTCCAATACAACACAAGGCTTGTGAAGTTGACAATTGTGCATTTTCAGCTAAGGAACTTGTTATGGACCACATCAAAGCATGATGTTTACCTGATGCAGAACTTTTCTGTGATGCATTGGAACTCTTTGCACAGTAGAGGCATCGAAGTAATCAATGTGGCTAAACCAATTGTACCTACTGAGAAACGGCCAGGGTTGTTGGCACGACCACTCTCTAGAGTGCAGATAAGCACTATGGCTGTCAAGGAAAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGGTAGGCTGGTGTTATAACAAATGTTTCTTTGCGACTAATGAATCAGTTGTATATTTATTTCACATTTCTTATTTTTCATTTATTTGGAGCAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

215

Amino Acids

24.88

Weight (kDa)

6.3

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccI GTMKAC 2 cut(s) 66, 90
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 2 cut(s) 209, 429
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 2 cut(s) 146, 304
AluI AGCT 2 cut(s) 146, 304
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 1 cut(s) 505
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
Asp700I GAANNNNTTC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 187, 545
AvaII GGWCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 447
BfaI CTAG 2 cut(s) 147, 471
BisI GCNGC 2 cut(s) 55, 640
BlsI GCNGC 2 cut(s) 56, 641
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 3 cut(s) 339, 357, 405
BpiI GAAGAC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 176, 446, 529
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 3 cut(s) 176, 446, 529
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 17
BsnI GGCC 1 cut(s) 445
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 176, 446, 529
BssT1I CCWWGG 2 cut(s) 176, 529
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 2 cut(s) 210, 236
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 305, 435
BstDSI CCRYGG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 143, 301, 552
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 321
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 208, 428
CviAII CATG 3 cut(s) 177, 335, 645
CviQI GTAC 2 cut(s) 208, 428
DdeI CTNAG 2 cut(s) 305, 435
EaeI YGGCCR 1 cut(s) 443
Eam1104I CTCTTC 2 cut(s) 210, 236
EarI CTCTTC 2 cut(s) 210, 236
Eco130I CCWWGG 2 cut(s) 176, 529
Eco47I GGWCC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 176, 529
EcoT22I ATGCAT 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 176, 529
FaeI CATG 3 cut(s) 180, 338, 648
FaiI YATR 9 cut(s) 164, 178, 252, 319, 336, 491, 564, 601, 646
FatI CATG 3 cut(s) 176, 334, 644
FblI GTMKAC 2 cut(s) 66, 90
Fnu4HI GCNGC 2 cut(s) 55, 640
Fsp4HI GCNGC 2 cut(s) 55, 640
FspBI CTAG 2 cut(s) 147, 471
GluI GCNGC 2 cut(s) 55, 640
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 445
HgaI GACGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 180, 338, 648
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 3 cut(s) 74, 101, 590
HphI GGTGA 2 cut(s) 187, 545
Hpy166II GTNNAC 5 cut(s) 67, 91, 285, 343, 536
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 5 cut(s) 67, 91, 285, 343, 536
Hpy99I CGWCG 3 cut(s) 26, 74, 83
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 7 cut(s) 226, 295, 352, 370, 385, 478, 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 301, 552
HpyF3I CTNAG 2 cut(s) 305, 435
Hsp92II CATG 3 cut(s) 180, 338, 648
LmnI GCTCC 1 cut(s) 636
LpnPI CCDG 7 cut(s) 152, 211, 359, 432, 459, 504, 541
LweI GCATC 3 cut(s) 339, 357, 405
MaeI CTAG 2 cut(s) 147, 471
MaeIII GTNAC 1 cut(s) 105
MboII GAAGA 3 cut(s) 133, 227, 253
MfeI CAATTG 2 cut(s) 288, 423
MluCI AATT 4 cut(s) 190, 288, 423, 505
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 52, 177, 386
Mph1103I ATGCAT 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 2 cut(s) 288, 423
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 143, 301, 552
NcoI CCATGG 1 cut(s) 176
NlaIII CATG 3 cut(s) 180, 338, 648
NsiI ATGCAT 1 cut(s) 372
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 75, 78
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 101, 590
PkrI GCNGC 2 cut(s) 56, 641
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 445
PspPI GGNCC 1 cut(s) 321
RsaI GTAC 2 cut(s) 209, 429
RsaNI GTAC 2 cut(s) 208, 428
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 55, 640
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 447
SetI ASST 8 cut(s) 63, 99, 148, 306, 348, 433, 535, 552
SfaNI GCATC 3 cut(s) 339, 357, 405
SinI GGWCC 1 cut(s) 321
Sse9I AATT 4 cut(s) 190, 288, 423, 505
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 147, 471
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 2 cut(s) 176, 529
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 399
TasI AATT 4 cut(s) 190, 288, 423, 505
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 101, 590
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 4 cut(s) 134, 228, 603, 615
VpaK11BI GGWCC 1 cut(s) 321
XapI RAATTY 1 cut(s) 505
XbaI TCTAGA 1 cut(s) 470
XmiI GTMKAC 2 cut(s) 66, 90
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 2 cut(s) 147, 471
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.