Rh7CG500900

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001698
Physical Location & Seq
Reverse (-)
67675874 .. 67678153
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG500900.1

Sequence Viewer

Length: 663 bp
ATGCTAAGGAACTTGTTATGGGCCACATCAAAGCATGATGTTTACCTGATGCAGAACTTTTCTGTGATGCATTGGAACTCTTTGCACAGTAGAGGCATCGAAGTAATCAATGTGGCTAAACCAATTGTACCTACTGAGAAACGGCCTGGGTTGTTGGCACGACCACTCTCTAGAGTGCAGATAAGCACTATGGCTGTCAAGGAAAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAATGCCATCACTAATGCAGTGGATATTTTTCAAAACCCAACTGGCTCAATGAGGGTAATGACTGCTAATGATGATGCTCAAGTTAGAGTTTTTGAAATTGAAAAGTTCGCTTGCCTAAATCGCTTCTCCTTCGGGTGGTCTGTAAATAACACCTCTGTTAGTCCCGATGGTAAGCTGCTCGCAGTACTTGGTGATAGTGCAGACTGTTTGATTGCTGAGGCTCAGTCTGGTAAAGCTGTTGGGGGCCTCAAAGGGCACTTAGACTATTGCTTTTCTTCAGATTGGCACCCGGATGGACGAATCTTGGCTCCTGGGAACCAAGACACTACCTGTAGGCTATGGGACATAAGGAACCTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

220

Amino Acids

24.25

Weight (kDa)

7.65

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 64 - 218 5.8e-12 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 104 - 218 3.9e-08 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 109 - 219 3.9e-14 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 115 - 217 6.6e-09 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 115 - 218 2.7e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 118 - 218 2.9e-12 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 118 - 217 1.7e-09 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 585
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 129, 486
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 3 cut(s) 332, 395, 401
AjnI CCWGG 3 cut(s) 145, 262, 610
AluBI AGCT 2 cut(s) 475, 536
AluI AGCT 2 cut(s) 475, 536
AoxI GGCC 3 cut(s) 21, 143, 544
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 21, 544
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 245, 503
BaeGI GKGCMC 1 cut(s) 558
BanI GGYRCC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 462
BccI CCATC 3 cut(s) 314, 461, 587
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 3 cut(s) 147, 264, 612
BcnI CCSGG 1 cut(s) 590
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 631
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 4 cut(s) 147, 264, 590, 612
BmgT120I GGNCC 2 cut(s) 21, 544
BmiI GGNNCC 5 cut(s) 545, 587, 609, 617, 653
BmrFI CCNGG 4 cut(s) 147, 264, 590, 612
BmsI GCATC 4 cut(s) 39, 57, 105, 364
BpmI CTGGAG 1 cut(s) 285
Bpu10I CCTNAGC 2 cut(s) 5, 516
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 146, 229, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 3 cut(s) 147, 264, 612
BseDI CCNNGG 3 cut(s) 146, 229, 611
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 126, 507, 536
BseNI ACTGG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 1 cut(s) 462
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 2 cut(s) 197, 519
BshFI GGCC 3 cut(s) 23, 145, 546
BshNI GGYRCC 1 cut(s) 585
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 2 cut(s) 447, 656
BslI CCNNNNNNNGG 1 cut(s) 435
BsmFI GGGAC 2 cut(s) 447, 656
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 23, 145, 546
Bsp1286I GDGCHC 1 cut(s) 558
BspANI GGCC 3 cut(s) 23, 145, 546
BspCNI CTCAG 3 cut(s) 127, 508, 535
BspLI GGNNCC 5 cut(s) 545, 587, 609, 617, 653
BspT107I GGYRCC 1 cut(s) 585
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 146, 229, 611
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 3 cut(s) 147, 264, 612
Bst4CI ACNGT 2 cut(s) 89, 506
BstC8I GCNNGC 3 cut(s) 248, 412, 480
BstDEI CTNAG 5 cut(s) 5, 135, 516, 522, 559
BstF5I GGATG 1 cut(s) 598
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 3 cut(s) 147, 264, 612
BstSCI CCNGG 4 cut(s) 145, 262, 588, 610
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 462
BsuRI GGCC 3 cut(s) 23, 145, 546
BtsCI GGATG 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 3 cut(s) 248, 412, 480
Cfr13I GGNCC 2 cut(s) 21, 544
Csp6I GTAC 2 cut(s) 128, 485
CviAII CATG 2 cut(s) 35, 253
CviQI GTAC 2 cut(s) 128, 485
DdeI CTNAG 5 cut(s) 5, 135, 516, 522, 559
Eco130I CCWWGG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 145, 262, 610
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 38, 256
FaiI YATR 7 cut(s) 19, 36, 191, 254, 640, 647, 661
FaqI GGGAC 2 cut(s) 447, 656
FatI CATG 2 cut(s) 34, 252
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 476
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 476
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 3 cut(s) 23, 145, 546
HapII CCGG 1 cut(s) 590
Hin1II CATG 2 cut(s) 38, 256
HinfI GANTC 1 cut(s) 600
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 245, 503
Hpy166II GTNNAC 2 cut(s) 43, 236
Hpy188I TCNGA 1 cut(s) 580
Hpy188III TCNNGA 2 cut(s) 171, 464
Hpy8I GTNNAC 2 cut(s) 43, 236
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 2 cut(s) 89, 506
HpyCH4V TGCA 7 cut(s) 52, 70, 85, 178, 246, 317, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 5 cut(s) 5, 135, 516, 522, 559
Hsp92II CATG 2 cut(s) 38, 256
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 4 cut(s) 39, 57, 105, 364
MaeI CTAG 1 cut(s) 171
MboII GAAGA 1 cut(s) 567
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 3 cut(s) 123, 205, 396
MnlI CCTC 5 cut(s) 86, 345, 463, 511, 557
Mph1103I ATGCAT 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 591
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 4 cut(s) 147, 264, 590, 612
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 3 cut(s) 147, 264, 612
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 590
NlaIII CATG 2 cut(s) 38, 256
NlaIV GGNNCC 5 cut(s) 545, 587, 609, 617, 653
NsiI ATGCAT 1 cut(s) 72
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 600
PkrI GCNGC 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 145, 262, 610
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 3 cut(s) 145, 262, 610
PspN4I GGNNCC 5 cut(s) 545, 587, 609, 617, 653
PspPI GGNCC 2 cut(s) 21, 544
RsaI GTAC 2 cut(s) 129, 486
RsaNI GTAC 2 cut(s) 128, 485
RseI CAYNNNNRTG 1 cut(s) 591
SatI GCNGC 1 cut(s) 476
Sau96I GGNCC 2 cut(s) 21, 544
ScaI AGTACT 1 cut(s) 486
ScrFI CCNGG 4 cut(s) 147, 264, 590, 612
SduI GDGCHC 1 cut(s) 558
SetI ASST 9 cut(s) 48, 133, 235, 265, 455, 477, 538, 632, 657
SfaNI GCATC 4 cut(s) 39, 57, 105, 364
SfcI CTRYAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 3 cut(s) 123, 205, 396
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 4 cut(s) 145, 262, 588, 610
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 89, 506
TaqI TCGA 1 cut(s) 99
TasI AATT 3 cut(s) 123, 205, 396
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 600
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 324
XapI RAATTY 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 170
XspI CTAG 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.