RchiOBHm_Chr7g0239761

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001698
Physical Location & Seq
Reverse (-)
65515497 .. 65519201
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21489

Sequence Viewer

Length: 549 bp
ATGGGAGAGCTTAATTTCACCAGAGATGAGTACCGTGAGGCGCGATTGAAGCAGTATAAGAACTATGAGAACCTCGGTCGTCCTCATCGAGACCTCGAGAAGGAGTGCTTGCAAGTGGAGAAAGGGAAGAGTTTCTATGACTTTCACTACAACACAAGGCTTGTGAAGTCGACAATTGTGCATTTTCAGCTAAGGTATCTGTTATGGGCCACATCAAAGCATGATGTATACCTGATGCAGAACTTTTCAGTAATGCATTGGAACTCTTTGCACAGGAGAGGCACCGAGGTACTCAATGCGGCTAAACCAATTGTACCTACTGAGAAACGACCTGGGTTGTTGGCACGACCACTCTCTAGAGTGCAAATAAGCACTATGGCTGTCAAGGACAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAACTATTGCAGTGGATATTTTTCGAAAGGCATTTGGCTCAATGAGGGTAATGACTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

182

Amino Acids

21.19

Weight (kDa)

9.27

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 170, 228
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 299
AfaI GTAC 3 cut(s) 32, 291, 315
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 331, 448
AluBI AGCT 2 cut(s) 10, 190
AluI AGCT 2 cut(s) 10, 190
Alw26I GTCTC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 10, 431
AsuII TTCGAA 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 95
BanI GGYRCC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 2 cut(s) 333, 450
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 357
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 333, 450
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 2 cut(s) 333, 450
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 73, 285, 332, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 333, 450
BseDI CCNNGG 4 cut(s) 73, 285, 332, 415
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 509
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 84
BssECI CCNNGG 4 cut(s) 73, 285, 332, 415
BssNAI GTATAC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 333, 450
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 110, 434
BstDEI CTNAG 2 cut(s) 191, 321
BstENI CCTNNNNNAGG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 49, 187
BstNI CCWGG 2 cut(s) 333, 450
BstSCI CCNGG 2 cut(s) 331, 448
BstUI CGCG 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 110, 434
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 31, 290, 314
CviAII CATG 2 cut(s) 221, 439
CviJI RGCY 8 cut(s) 10, 160, 190, 209, 302, 380, 411, 523
CviKI_1 RGCY 8 cut(s) 10, 160, 190, 209, 302, 380, 411, 523
CviQI GTAC 3 cut(s) 31, 290, 314
DdeI CTNAG 2 cut(s) 191, 321
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 331, 448
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 224, 442
FaiI YATR 8 cut(s) 57, 66, 138, 205, 222, 229, 377, 440
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 2 cut(s) 220, 438
FblI GTMKAC 2 cut(s) 170, 228
Fnu4HI GCNGC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 209
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 224, 442
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HphI GGTGA 2 cut(s) 10, 431
Hpy166II GTNNAC 3 cut(s) 171, 229, 422
Hpy188III TCNNGA 3 cut(s) 89, 97, 357
Hpy8I GTNNAC 3 cut(s) 171, 229, 422
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 9 cut(s) 112, 181, 238, 256, 271, 364, 432, 495, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 187
HpyF3I CTNAG 2 cut(s) 191, 321
Hsp92II CATG 2 cut(s) 224, 442
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 34, 245, 259, 318, 345, 390, 435, 462
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 357
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 2 cut(s) 174, 309
MluCI AATT 4 cut(s) 13, 174, 309, 391
MnlI CCTC 7 cut(s) 31, 83, 93, 104, 272, 280, 523
Mph1103I ATGCAT 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 333, 450
MunI CAATTG 2 cut(s) 174, 309
MvaI CCWGG 2 cut(s) 333, 450
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 49, 187
NlaIII CATG 2 cut(s) 224, 442
NlaIV GGNNCC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 258
NspV TTCGAA 1 cut(s) 509
PaeR7I CTCGAG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 301
Psp6I CCWGG 2 cut(s) 331, 448
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 2 cut(s) 331, 448
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 207
RsaI GTAC 3 cut(s) 32, 291, 315
RsaNI GTAC 3 cut(s) 31, 290, 314
SalI GTCGAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 333, 450
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 13, 174, 309, 391
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 331, 448
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 4 cut(s) 88, 96, 170, 509
TaqII GACCGA 1 cut(s) 65
TasI AATT 4 cut(s) 13, 174, 309, 391
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 2 cut(s) 170, 228
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.