WD repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_Prp19 | PF24814 | 269 - 465 | 1.3e-18 | Prp19 WD40 domain |
| Beta-prop_THOC3 | PF25174 | 316 - 492 | 2.6e-26 | THOC3 beta-propeller domain |
| Beta-prop_WDR36-Utp21_2nd | PF25168 | 321 - 453 | 4.6e-12 | WDR36/Utp21 second beta-propeller domain |
| WD40_WDHD1_1st | PF24817 | 322 - 426 | 1.1e-06 | WDHD1 first WD40 domain |
| Beta-prop_WDR5 | PF25175 | 323 - 500 | 3.6e-20 | WDR5 beta-propeller domain |
| Beta-prop_EML_2 | PF23414 | 323 - 467 | 1.3e-15 | Echinoderm microtubule-associated protein second beta-propeller |
| Beta-prop_WDR3_2nd | PF25172 | 324 - 428 | 1e-06 | WDR3 second beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 329 - 500 | 3.6e-13 | WDR3 first beta-propeller domain |
| WDR55 | PF24796 | 353 - 496 | 1.4e-06 | WDR55 |
| WD40 | PF00400 | 383 - 420 | 3.1e-07 | WD domain, G-beta repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 249 |
| AbsI | CCTCGAGG | 1 cut(s) | 305 |
| AccB1I | GGYRCC | 1 cut(s) | 1200 |
| AccI | GTMKAC | 3 cut(s) | 315, 599, 657 |
| AccII | CGCG | 1 cut(s) | 472 |
| AccIII | TCCGGA | 1 cut(s) | 1397 |
| AciI | CCGC | 2 cut(s) | 295, 1036 |
| AcoI | YGGCCR | 2 cut(s) | 729, 1350 |
| AcsI | RAATTY | 2 cut(s) | 625, 1325 |
| AcuI | CTGAAG | 3 cut(s) | 1176, 1438, 1488 |
| AcyI | GRCGYC | 1 cut(s) | 246 |
| AfaI | GTAC | 5 cut(s) | 221, 461, 720, 744, 1101 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 181, 529, 1050 |
| AgsI | TTSAA | 7 cut(s) | 189, 347, 478, 575, 1016, 1294, 1522 |
| AjnI | CCWGG | 3 cut(s) | 180, 760, 877 |
| AluBI | AGCT | 9 cut(s) | 164, 398, 619, 1090, 1130, 1151, 1196, 1319, 1472 |
| AluI | AGCT | 9 cut(s) | 164, 398, 619, 1090, 1130, 1151, 1196, 1319, 1472 |
| Ama87I | CYCGRG | 3 cut(s) | 215, 305, 524 |
| Aor13HI | TCCGGA | 1 cut(s) | 1397 |
| AoxI | GGCC | 4 cut(s) | 636, 729, 1159, 1350 |
| ApeKI | GCWGC | 2 cut(s) | 711, 1090 |
| ApoI | RAATTY | 2 cut(s) | 625, 1325 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 326, 358 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 560 |
| AspLEI | GCGC | 1 cut(s) | 472 |
| AspS9I | GGNCC | 2 cut(s) | 636, 1159 |
| AsuC2I | CCSGG | 1 cut(s) | 1205 |
| AsuHPI | GGTGA | 5 cut(s) | 382, 860, 1118, 1321, 1445 |
| AvaI | CYCGRG | 3 cut(s) | 215, 305, 524 |
| BaeGI | GKGCMC | 1 cut(s) | 1173 |
| BalI | TGGCCA | 2 cut(s) | 731, 1352 |
| BanI | GGYRCC | 1 cut(s) | 1200 |
| BbsI | GAAGAC | 3 cut(s) | 270, 354, 1549 |
| BbvI | GCAGC | 2 cut(s) | 723, 1077 |
| BccI | CCATC | 4 cut(s) | 929, 1076, 1202, 1331 |
| BceAI | ACGGC | 2 cut(s) | 256, 1271 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 3 cut(s) | 182, 762, 879 |
| BcnI | CCSGG | 1 cut(s) | 1205 |
| BfaI | CTAG | 3 cut(s) | 786, 1283, 1561 |
| BfmI | CTRYAG | 1 cut(s) | 1246 |
| BisI | GCNGC | 2 cut(s) | 712, 1091 |
| BlpI | GCTNAGC | 1 cut(s) | 1359 |
| BlsI | GCNGC | 2 cut(s) | 713, 1092 |
| BmcAI | AGTACT | 2 cut(s) | 720, 1101 |
| Bme1390I | CCNGG | 4 cut(s) | 182, 762, 879, 1205 |
| BmeT110I | CYCGRG | 3 cut(s) | 215, 305, 524 |
| BmgT120I | GGNCC | 2 cut(s) | 636, 1159 |
| BmiI | GGNNCC | 4 cut(s) | 1160, 1202, 1232, 1268 |
| BmrFI | CCNGG | 4 cut(s) | 182, 762, 879, 1205 |
| BmrI | ACTGGG | 2 cut(s) | 1236, 1387 |
| BmsI | GCATC | 4 cut(s) | 654, 672, 979, 1123 |
| BmuI | ACTGGG | 2 cut(s) | 1236, 1387 |
| BpiI | GAAGAC | 3 cut(s) | 270, 354, 1549 |
| BpmI | CTGGAG | 1 cut(s) | 900 |
| Bpu10I | CCTNAGC | 1 cut(s) | 620 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1359 |
| BpuEI | CTTGAG | 1 cut(s) | 978 |
| BpuMI | CCSGG | 1 cut(s) | 1205 |
| BsaHI | GRCGYC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 5 cut(s) | 428, 502, 761, 844, 1353 |
| BsaWI | WCCGGW | 1 cut(s) | 1397 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 308, 338, 1025, 1055 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 181, 529, 1050 |
| Bse1I | ACTGG | 3 cut(s) | 961, 1231, 1393 |
| BseAI | TCCGGA | 1 cut(s) | 1397 |
| BseBI | CCWGG | 3 cut(s) | 182, 762, 879 |
| BseDI | CCNNGG | 5 cut(s) | 428, 502, 761, 844, 1353 |
| BseGI | GGATG | 2 cut(s) | 88, 1213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 181, 529, 1050 |
| BseMII | CTCAG | 5 cut(s) | 107, 690, 975, 1151, 1350 |
| BseNI | ACTGG | 3 cut(s) | 961, 1231, 1393 |
| BseSI | GKGCMC | 1 cut(s) | 1173 |
| BseXI | GCAGC | 2 cut(s) | 723, 1077 |
| BseYI | CCCAGC | 1 cut(s) | 833 |
| BsgI | GTGCAG | 2 cut(s) | 812, 1134 |
| Bsh1236I | CGCG | 1 cut(s) | 472 |
| Bsh1285I | CGRYCG | 1 cut(s) | 508 |
| BshFI | GGCC | 4 cut(s) | 638, 731, 1161, 1352 |
| BshNI | GGYRCC | 1 cut(s) | 1200 |
| BsiEI | CGRYCG | 1 cut(s) | 508 |
| BsiHKCI | CYCGRG | 3 cut(s) | 215, 305, 524 |
| BsiSI | CCGG | 3 cut(s) | 1205, 1398, 1443 |
| BslFI | GGGAC | 3 cut(s) | 1264, 1271, 1425 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 181, 529, 1050 |
| BsmFI | GGGAC | 3 cut(s) | 1264, 1271, 1425 |
| BsmI | GAATGC | 1 cut(s) | 922 |
| BsnI | GGCC | 4 cut(s) | 638, 731, 1161, 1352 |
| BsoBI | CYCGRG | 3 cut(s) | 215, 305, 524 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1173 |
| Bsp13I | TCCGGA | 1 cut(s) | 1397 |
| Bsp143I | GATC | 2 cut(s) | 1423, 1492 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1359 |
| Bsp19I | CCATGG | 2 cut(s) | 428, 1353 |
| BspACI | CCGC | 2 cut(s) | 295, 1036 |
| BspANI | GGCC | 4 cut(s) | 638, 731, 1161, 1352 |
| BspCNI | CTCAG | 5 cut(s) | 106, 689, 974, 1150, 1351 |
| BspEI | TCCGGA | 1 cut(s) | 1397 |
| BspFNI | CGCG | 1 cut(s) | 472 |
| BspLI | GGNNCC | 4 cut(s) | 1160, 1202, 1232, 1268 |
| BspT107I | GGYRCC | 1 cut(s) | 1200 |
| BsrI | ACTGG | 3 cut(s) | 961, 1231, 1393 |
| BssECI | CCNNGG | 5 cut(s) | 428, 502, 761, 844, 1353 |
| BssMI | GATC | 2 cut(s) | 1423, 1492 |
| BssNAI | GTATAC | 1 cut(s) | 658 |
| BssNI | GRCGYC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 3 cut(s) | 428, 844, 1353 |
| Bst1107I | GTATAC | 1 cut(s) | 658 |
| Bst2UI | CCWGG | 3 cut(s) | 182, 762, 879 |
| Bst4CI | ACNGT | 2 cut(s) | 464, 1121 |
| Bst6I | CTCTTC | 2 cut(s) | 368, 551 |
| BstACI | GRCGYC | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 5 cut(s) | 539, 863, 1027, 1095, 1365 |
| BstDEI | CTNAG | 7 cut(s) | 93, 620, 676, 961, 1137, 1174, 1359 |
| BstDSI | CCRYGG | 2 cut(s) | 428, 1353 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 2 cut(s) | 88, 1213 |
| BstFNI | CGCG | 1 cut(s) | 472 |
| BstHHI | GCGC | 1 cut(s) | 472 |
| BstKTI | GATC | 2 cut(s) | 1426, 1495 |
| BstMBI | GATC | 2 cut(s) | 1423, 1492 |
| BstMCI | CGRYCG | 1 cut(s) | 508 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 16, 395, 478, 1035, 1316, 1364 |
| BstNI | CCWGG | 3 cut(s) | 182, 762, 879 |
| BstSCI | CCNGG | 4 cut(s) | 180, 760, 877, 1203 |
| BstSFI | CTRYAG | 1 cut(s) | 1246 |
| BstSLI | GKGCMC | 1 cut(s) | 1173 |
| BstUI | CGCG | 1 cut(s) | 472 |
| BstV1I | GCAGC | 2 cut(s) | 723, 1077 |
| BstV2I | GAAGAC | 3 cut(s) | 270, 354, 1549 |
| BstZ17I | GTATAC | 1 cut(s) | 658 |
| BsuRI | GGCC | 4 cut(s) | 638, 731, 1161, 1352 |
| BtgI | CCRYGG | 2 cut(s) | 428, 1353 |
| BtsCI | GGATG | 2 cut(s) | 88, 1213 |
| BtsI | GCAGTG | 1 cut(s) | 939 |
| BtsIMutI | CAGTG | 3 cut(s) | 684, 939, 969 |
| Cac8I | GCNNGC | 5 cut(s) | 539, 863, 1027, 1095, 1365 |
| CfoI | GCGC | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 2 cut(s) | 636, 1159 |
| CseI | GACGC | 1 cut(s) | 281 |
| Csp6I | GTAC | 5 cut(s) | 220, 460, 719, 743, 1100 |
| CviAII | CATG | 4 cut(s) | 429, 650, 868, 1354 |
| CviQI | GTAC | 5 cut(s) | 220, 460, 719, 743, 1100 |
| DdeI | CTNAG | 7 cut(s) | 93, 620, 676, 961, 1137, 1174, 1359 |
| DpnI | GATC | 2 cut(s) | 1425, 1494 |
| DpnII | GATC | 2 cut(s) | 1423, 1492 |
| EaeI | YGGCCR | 2 cut(s) | 729, 1350 |
| Eam1104I | CTCTTC | 2 cut(s) | 368, 551 |
| EarI | CTCTTC | 2 cut(s) | 368, 551 |
| Eco130I | CCWWGG | 3 cut(s) | 428, 844, 1353 |
| Eco57I | CTGAAG | 3 cut(s) | 1176, 1438, 1488 |
| Eco88I | CYCGRG | 3 cut(s) | 215, 305, 524 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1159 |
| EcoRII | CCWGG | 3 cut(s) | 180, 760, 877 |
| EcoT14I | CCWWGG | 3 cut(s) | 428, 844, 1353 |
| EcoT22I | ATGCAT | 1 cut(s) | 687 |
| ErhI | CCWWGG | 3 cut(s) | 428, 844, 1353 |
| FaeI | CATG | 4 cut(s) | 432, 653, 871, 1357 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 339, 371, 521, 553 |
| FaqI | GGGAC | 3 cut(s) | 1264, 1271, 1425 |
| FatI | CATG | 4 cut(s) | 428, 649, 867, 1353 |
| FauI | CCCGC | 1 cut(s) | 302 |
| FauNDI | CATATG | 1 cut(s) | 1501 |
| FblI | GTMKAC | 3 cut(s) | 315, 599, 657 |
| Fnu4HI | GCNGC | 2 cut(s) | 712, 1091 |
| FokI | GGATG | 2 cut(s) | 75, 1220 |
| Fsp4HI | GCNGC | 2 cut(s) | 712, 1091 |
| FspBI | CTAG | 3 cut(s) | 786, 1283, 1561 |
| GlaI | GCGC | 1 cut(s) | 471 |
| GluI | GCNGC | 2 cut(s) | 712, 1091 |
| GsaI | CCCAGC | 1 cut(s) | 837 |
| GsuI | CTGGAG | 1 cut(s) | 900 |
| HaeIII | GGCC | 4 cut(s) | 638, 731, 1161, 1352 |
| HapII | CCGG | 3 cut(s) | 1205, 1398, 1443 |
| HgaI | GACGC | 1 cut(s) | 281 |
| HhaI | GCGC | 1 cut(s) | 472 |
| Hin1I | GRCGYC | 1 cut(s) | 246 |
| Hin1II | CATG | 4 cut(s) | 432, 653, 871, 1357 |
| Hin6I | GCGC | 1 cut(s) | 470 |
| HinP1I | GCGC | 1 cut(s) | 470 |
| HincII | GTYRAC | 2 cut(s) | 229, 600 |
| HindII | GTYRAC | 2 cut(s) | 229, 600 |
| HindIII | AAGCTT | 1 cut(s) | 1470 |
| HinfI | GANTC | 7 cut(s) | 55, 97, 323, 359, 1215, 1277, 1463 |
| HpaII | CCGG | 3 cut(s) | 1205, 1398, 1443 |
| HphI | GGTGA | 5 cut(s) | 382, 860, 1118, 1321, 1445 |
| Hpy166II | GTNNAC | 6 cut(s) | 229, 316, 600, 658, 851, 1378 |
| Hpy188I | TCNGA | 5 cut(s) | 96, 328, 1276, 1336, 1468 |
| Hpy188III | TCNNGA | 9 cut(s) | 52, 202, 518, 526, 786, 1079, 1143, 1398, 1547 |
| Hpy8I | GTNNAC | 6 cut(s) | 229, 316, 600, 658, 851, 1378 |
| Hpy99I | CGWCG | 7 cut(s) | 227, 248, 251, 275, 332, 335, 338 |
| HpyAV | CCTTC | 5 cut(s) | 523, 544, 1054, 1288, 1462 |
| HpyCH4III | ACNGT | 2 cut(s) | 464, 1121 |
| HpyCH4IV | ACGT | 3 cut(s) | 222, 246, 1011 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 16, 395, 478, 1035, 1316, 1364 |
| HpyF3I | CTNAG | 7 cut(s) | 93, 620, 676, 961, 1137, 1174, 1359 |
| HpySE526I | ACGT | 3 cut(s) | 222, 246, 1011 |
| Hsp92I | GRCGYC | 1 cut(s) | 246 |
| Hsp92II | CATG | 4 cut(s) | 432, 653, 871, 1357 |
| HspAI | GCGC | 1 cut(s) | 470 |
| Kpn2I | TCCGGA | 1 cut(s) | 1397 |
| Kzo9I | GATC | 2 cut(s) | 1423, 1492 |
| LmnI | GCTCC | 1 cut(s) | 1307 |
| Lsp1109I | GCAGC | 2 cut(s) | 723, 1077 |
| LweI | GCATC | 4 cut(s) | 654, 672, 979, 1123 |
| MaeI | CTAG | 3 cut(s) | 786, 1283, 1561 |
| MaeII | ACGT | 3 cut(s) | 222, 246, 1011 |
| MalI | GATC | 2 cut(s) | 1425, 1494 |
| MboI | GATC | 2 cut(s) | 1423, 1492 |
| MboII | GAAGA | 8 cut(s) | 50, 275, 359, 385, 568, 1182, 1311, 1549 |
| MfeI | CAATTG | 2 cut(s) | 603, 738 |
| MhlI | GDGCHC | 1 cut(s) | 1173 |
| MlsI | TGGCCA | 2 cut(s) | 731, 1352 |
| MluCI | AATT | 8 cut(s) | 39, 176, 442, 603, 625, 738, 820, 1325 |
| MluNI | TGGCCA | 2 cut(s) | 731, 1352 |
| MlyI | GAGTC | 3 cut(s) | 317, 1286, 1457 |
| MmeI | TCCRAC | 2 cut(s) | 351, 977 |
| Mox20I | TGGCCA | 2 cut(s) | 731, 1352 |
| Mph1103I | ATGCAT | 1 cut(s) | 687 |
| MroI | TCCGGA | 1 cut(s) | 1397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 560 |
| MscI | TGGCCA | 2 cut(s) | 731, 1352 |
| MseI | TTAA | 1 cut(s) | 441 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1206 |
| Msp20I | TGGCCA | 2 cut(s) | 731, 1352 |
| MspI | CCGG | 3 cut(s) | 1205, 1398, 1443 |
| MspR9I | CCNGG | 4 cut(s) | 182, 762, 879, 1205 |
| MunI | CAATTG | 2 cut(s) | 603, 738 |
| Mva1269I | GAATGC | 1 cut(s) | 922 |
| MvaI | CCWGG | 3 cut(s) | 182, 762, 879 |
| MvnI | CGCG | 1 cut(s) | 472 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 16, 395, 478, 1035, 1316, 1364 |
| NciI | CCSGG | 1 cut(s) | 1205 |
| NcoI | CCATGG | 2 cut(s) | 428, 1353 |
| NdeI | CATATG | 1 cut(s) | 1501 |
| NdeII | GATC | 2 cut(s) | 1423, 1492 |
| NlaIII | CATG | 4 cut(s) | 432, 653, 871, 1357 |
| NlaIV | GGNNCC | 4 cut(s) | 1160, 1202, 1232, 1268 |
| NsiI | ATGCAT | 1 cut(s) | 687 |
| PaeR7I | CTCGAG | 3 cut(s) | 215, 305, 524 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 213, 222, 228, 246, 324 |
| PctI | GAATGC | 1 cut(s) | 922 |
| PdmI | GAANNNNTTC | 1 cut(s) | 560 |
| PfeI | GAWTC | 4 cut(s) | 55, 97, 359, 1215 |
| PkrI | GCNGC | 2 cut(s) | 713, 1092 |
| PleI | GAGTC | 3 cut(s) | 317, 1285, 1457 |
| PpsI | GAGTC | 3 cut(s) | 317, 1285, 1457 |
| Psp6I | CCWGG | 3 cut(s) | 180, 760, 877 |
| PspFI | CCCAGC | 1 cut(s) | 833 |
| PspGI | CCWGG | 3 cut(s) | 180, 760, 877 |
| PspN4I | GGNNCC | 4 cut(s) | 1160, 1202, 1232, 1268 |
| PspPI | GGNCC | 2 cut(s) | 636, 1159 |
| PspXI | VCTCGAGB | 2 cut(s) | 215, 305 |
| RsaI | GTAC | 5 cut(s) | 221, 461, 720, 744, 1101 |
| RsaNI | GTAC | 5 cut(s) | 220, 460, 719, 743, 1100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1206 |
| SalI | GTCGAC | 1 cut(s) | 598 |
| SaqAI | TTAA | 1 cut(s) | 441 |
| SatI | GCNGC | 2 cut(s) | 712, 1091 |
| Sau3AI | GATC | 2 cut(s) | 1423, 1492 |
| Sau96I | GGNCC | 2 cut(s) | 636, 1159 |
| ScaI | AGTACT | 2 cut(s) | 720, 1101 |
| SchI | GAGTC | 3 cut(s) | 317, 1286, 1457 |
| ScrFI | CCNGG | 4 cut(s) | 182, 762, 879, 1205 |
| SduI | GDGCHC | 1 cut(s) | 1173 |
| SfaNI | GCATC | 4 cut(s) | 654, 672, 979, 1123 |
| SfcI | CTRYAG | 1 cut(s) | 1246 |
| Sfr274I | CTCGAG | 3 cut(s) | 215, 305, 524 |
| SlaI | CTCGAG | 3 cut(s) | 215, 305, 524 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1206 |
| SmlI | CTYRAG | 4 cut(s) | 215, 305, 524, 993 |
| SmoI | CTYRAG | 4 cut(s) | 215, 305, 524, 993 |
| Sse9I | AATT | 8 cut(s) | 39, 176, 442, 603, 625, 738, 820, 1325 |
| SsiI | CCGC | 2 cut(s) | 295, 1036 |
| SspMI | CTAG | 3 cut(s) | 786, 1283, 1561 |
| StyD4I | CCNGG | 4 cut(s) | 180, 760, 877, 1203 |
| StyI | CCWWGG | 3 cut(s) | 428, 844, 1353 |
| TaaI | ACNGT | 2 cut(s) | 464, 1121 |
| TaiI | ACGT | 3 cut(s) | 225, 249, 1014 |
| TaqI | TCGA | 6 cut(s) | 216, 306, 362, 525, 599, 1047 |
| TaqII | GACCGA | 1 cut(s) | 494 |
| TasI | AATT | 8 cut(s) | 39, 176, 442, 603, 625, 738, 820, 1325 |
| TatI | WGTACW | 2 cut(s) | 718, 1099 |
| TfiI | GAWTC | 4 cut(s) | 55, 97, 359, 1215 |
| Tru1I | TTAA | 1 cut(s) | 441 |
| Tru9I | TTAA | 1 cut(s) | 441 |
| TscAI | CASTG | 3 cut(s) | 684, 939, 969 |
| TseI | GCWGC | 2 cut(s) | 711, 1090 |
| TspDTI | ATGAA | 2 cut(s) | 599, 884 |
| TspRI | CASTG | 3 cut(s) | 684, 939, 969 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XapI | RAATTY | 2 cut(s) | 625, 1325 |
| XbaI | TCTAGA | 1 cut(s) | 785 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 953 |
| XhoI | CTCGAG | 3 cut(s) | 215, 305, 524 |
| XmiI | GTMKAC | 3 cut(s) | 315, 599, 657 |
| XmnI | GAANNNNTTC | 1 cut(s) | 560 |
| XspI | CTAG | 3 cut(s) | 786, 1283, 1561 |
| ZraI | GACGTC | 1 cut(s) | 247 |
| ZrmI | AGTACT | 2 cut(s) | 720, 1101 |
| Zsp2I | ATGCAT | 1 cut(s) | 687 |