Rh7CG501100

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001698
Physical Location & Seq
Reverse (-)
67681319 .. 67772216
90898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG501100.1

Sequence Viewer

Length: 801 bp
ATGGCGTATTTCCAGAACGATGACCTCGAGTACGTCGTCAACGACTACTACGGCGACGTCGTTGAGTTTGAGGAAGACAACGACGCTTTTGCTGATAACCAGCCCCGCCCAAGCCTCGAGGTCGTAGGCGACGACTCCGACGACGACGACGACTTTGAAGACGACCTTGATTCGAGCAAGGTGAAGAGTGATACATCGGCTTTGGAAGCTAGAAATGGAAAGGATATACAGGGAATACCATGGGAGAGGCTTAATTTTACCAGAGATAAGTACCGTGAGGCGCGATTGAAGCAGTATAAGAACTATGAGAGCCTCGGTCGTCCTCGTCAAGACCTCGAGAAGGAGTGCTTGCAAGTGGAGAAGGGGAAGAGTTTCTATGACTTTCAATACAACACAAGGCTTGTGAAGTCGACAATTGTTCATTTTCAGCTAAGGAATTTGTTATGGGCCACATCAAAGCATGATGTATACCTGATGCAGAACTTCTCAGTGATGCATTGGAACTCTTTGCACAGGAGAGGCAGCGAAGTACTCAATGTGGCCAAACCAATTGTACCTACCGAGAAACAACCTGGGTTGTTGGCACGACCACTCTCTAGAGTGCAGATAAGCACTATGGCTGTCAAGGACAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAACTATTGCAGTGGATATTTTCTGAAAGGCATTGTAAGTTTTCCTCCAGAAAATATTGCAGGTTGCTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

266

Amino Acids

30.49

Weight (kDa)

5.0

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AbsI CCTCGAGG 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 776
AccI GTMKAC 2 cut(s) 410, 468
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 436
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 4 cut(s) 32, 272, 531, 555
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 158, 289, 386
AjnI CCWGG 2 cut(s) 571, 688
AluBI AGCT 2 cut(s) 209, 430
AluI AGCT 2 cut(s) 209, 430
Ama87I CYCGRG 3 cut(s) 26, 116, 335
AoxI GGCC 2 cut(s) 447, 540
ApeKI GCWGC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 193, 671
AvaI CYCGRG 3 cut(s) 26, 116, 335
BalI TGGCCA 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 81, 165
BbvI GCAGC 1 cut(s) 534
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 573, 690
BfaI CTAG 2 cut(s) 210, 597
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
BmcAI AGTACT 1 cut(s) 531
Bme1390I CCNGG 2 cut(s) 573, 690
BmeT110I CYCGRG 3 cut(s) 26, 116, 335
BmgT120I GGNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 573, 690
BmsI GCATC 2 cut(s) 465, 483
BpiI GAAGAC 2 cut(s) 81, 165
BpmI CTGGAG 2 cut(s) 711, 756
Bpu10I CCTNAGC 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 239, 313, 572, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 573, 690
BseDI CCNNGG 4 cut(s) 239, 313, 572, 655
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 501
BseXI GCAGC 1 cut(s) 534
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 449, 542
BsiEI CGRYCG 1 cut(s) 319
BsiHKCI CYCGRG 3 cut(s) 26, 116, 335
BslI CCNNNNNNNGG 1 cut(s) 340
BsnI GGCC 2 cut(s) 449, 542
BsoBI CYCGRG 3 cut(s) 26, 116, 335
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 449, 542
BspCNI CTCAG 1 cut(s) 500
BspFNI CGCG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 776
BssECI CCNNGG 4 cut(s) 239, 313, 572, 655
BssNAI GTATAC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 239, 655
Bst1107I GTATAC 1 cut(s) 469
Bst2UI CCWGG 2 cut(s) 573, 690
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 179, 362
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 350, 674
BstDEI CTNAG 2 cut(s) 431, 487
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 283
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 206, 289
BstNI CCWGG 2 cut(s) 573, 690
BstSCI CCNGG 2 cut(s) 571, 688
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 534
BstV2I GAAGAC 2 cut(s) 81, 165
BstZ17I GTATAC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 449, 542
BtgI CCRYGG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 495, 742
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 2 cut(s) 350, 674
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 447
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 31, 271, 530, 554
CviAII CATG 3 cut(s) 240, 461, 679
CviQI GTAC 4 cut(s) 31, 271, 530, 554
DdeI CTNAG 2 cut(s) 431, 487
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 179, 362
EarI CTCTTC 2 cut(s) 179, 362
Eco130I CCWWGG 2 cut(s) 239, 655
Eco88I CYCGRG 3 cut(s) 26, 116, 335
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 571, 688
EcoT14I CCWWGG 2 cut(s) 239, 655
EcoT22I ATGCAT 1 cut(s) 498
ErhI CCWWGG 2 cut(s) 239, 655
FaeI CATG 3 cut(s) 243, 464, 682
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 332, 364
FatI CATG 3 cut(s) 239, 460, 678
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 2 cut(s) 410, 468
Fnu4HI GCNGC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 2 cut(s) 210, 597
GlaI GCGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 523
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 2 cut(s) 711, 756
HaeIII GGCC 2 cut(s) 449, 542
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 243, 464, 682
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 40, 411
HindII GTYRAC 2 cut(s) 40, 411
HinfI GANTC 2 cut(s) 134, 170
HphI GGTGA 2 cut(s) 193, 671
Hpy166II GTNNAC 4 cut(s) 40, 411, 469, 662
Hpy188I TCNGA 2 cut(s) 139, 750
Hpy188III TCNNGA 5 cut(s) 13, 329, 337, 597, 773
Hpy8I GTNNAC 4 cut(s) 40, 411, 469, 662
Hpy99I CGWCG 9 cut(s) 38, 59, 62, 86, 134, 143, 146, 149, 152
HpyAV CCTTC 2 cut(s) 334, 355
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 33, 57
HpyCH4V TGCA 8 cut(s) 352, 478, 496, 511, 604, 672, 735, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 289
HpyF3I CTNAG 2 cut(s) 431, 487
HpySE526I ACGT 2 cut(s) 33, 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 243, 464, 682
HspAI GCGC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 534
LweI GCATC 2 cut(s) 465, 483
MaeI CTAG 2 cut(s) 210, 597
MaeII ACGT 2 cut(s) 33, 57
MboII GAAGA 4 cut(s) 86, 170, 196, 379
MfeI CAATTG 2 cut(s) 414, 549
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 5 cut(s) 253, 414, 436, 549, 631
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 542
MspR9I CCNGG 2 cut(s) 573, 690
MunI CAATTG 2 cut(s) 414, 549
MvaI CCWGG 2 cut(s) 573, 690
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 206, 289
NcoI CCATGG 1 cut(s) 239
NlaIII CATG 3 cut(s) 243, 464, 682
NsiI ATGCAT 1 cut(s) 498
PaeR7I CTCGAG 3 cut(s) 26, 116, 335
PcsI WCGNNNNNNNCGW 7 cut(s) 24, 33, 39, 57, 129, 138, 147
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 571, 688
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 2 cut(s) 571, 688
PspPI GGNCC 1 cut(s) 447
PspXI VCTCGAGB 2 cut(s) 26, 116
RsaI GTAC 4 cut(s) 32, 272, 531, 555
RsaNI GTAC 4 cut(s) 31, 271, 530, 554
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 523
Sau96I GGNCC 1 cut(s) 447
ScaI AGTACT 1 cut(s) 531
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 573, 690
SfaNI GCATC 2 cut(s) 465, 483
Sfr274I CTCGAG 3 cut(s) 26, 116, 335
SlaI CTCGAG 3 cut(s) 26, 116, 335
SmlI CTYRAG 3 cut(s) 26, 116, 335
SmoI CTYRAG 3 cut(s) 26, 116, 335
Sse9I AATT 5 cut(s) 253, 414, 436, 549, 631
SsiI CCGC 1 cut(s) 106
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 210, 597
StyD4I CCNGG 2 cut(s) 571, 688
StyI CCWWGG 2 cut(s) 239, 655
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 2 cut(s) 36, 60
TaqI TCGA 5 cut(s) 27, 117, 173, 336, 410
TaqII GACCGA 1 cut(s) 305
TasI AATT 5 cut(s) 253, 414, 436, 549, 631
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 495, 742
TseI GCWGC 1 cut(s) 522
TspDTI ATGAA 2 cut(s) 410, 695
TspRI CASTG 2 cut(s) 495, 742
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 596
XhoI CTCGAG 3 cut(s) 26, 116, 335
XmiI GTMKAC 2 cut(s) 410, 468
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 210, 597
ZraI GACGTC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.