Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003622.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

68836 .. 69502

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003622.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgttggcttcgttatatattggcaaaacaaggttattctttaccctttcgctcaatgttggcttcgttatatattggcagaacacttctgttagtcctgatggtaagctgctcgcagtgcttggtgatagtgcagactgtttgatagctgatgctcagtctggaaaagctgtcgggggcctgaaagggcacttagactattgcttttcctcagcttggcacccggatgcgcgaatcttagctactgggaaccaagacactacttgcaggttatgggacgtaaggaacctgtcagagtccctagtcgtgttgaagggaagaatgggagcagtaagggctataaaattcacctctgatggtcgttttatggccatggctgagccagcagactttgttcacatcattgatacccagtccggatatgcaaaggaacaacagattgatctgtttggtgagattgccggaatatccttcagccccgactctgaagctttatttattggggttgctgatcgcacatatggtagtgtattggaattcaataagaggcactataatccctatcaagaaatagtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

193

Amino Acids

21.23

Weight (kDa)

5.51

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	344, 536
AcuI	CTGAAG	2 cut(s)	457, 507
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	313, 541
AluBI	AGCT	6 cut(s)	109, 149, 170, 215, 242, 491
AluI	AGCT	6 cut(s)	109, 149, 170, 215, 242, 491
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	2 cut(s)	178, 369
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	344, 536
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	137, 340, 464
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	568
BbvCI	CCTCAGC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	95, 350
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	302, 580
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	110
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	179, 221, 251, 287
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	2 cut(s)	255, 406
BmsI	GCATC	2 cut(s)	142, 217
BmuI	ACTGGG	2 cut(s)	255, 406
BpiI	GAAGAC	1 cut(s)	568
Bpu10I	CCTNAGC	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	250, 412
BseAI	TCCGGA	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	170, 225, 369
BseNI	ACTGG	2 cut(s)	250, 412
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	180, 371
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	224, 417, 462
BslFI	GGGAC	2 cut(s)	283, 290
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	283, 290
BsnI	GGCC	2 cut(s)	180, 371
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	442, 511
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	2 cut(s)	180, 371
BspCNI	CTCAG	3 cut(s)	169, 224, 370
BspEI	TCCGGA	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	179, 221, 251, 287
BspMI	ACCTGC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	250, 412
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	442, 511
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	114, 384
BstDEI	CTNAG	5 cut(s)	156, 193, 211, 238, 378
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	445, 514
BstMBI	GATC	2 cut(s)	442, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 335, 383
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	180, 371
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	114, 384
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	1 cut(s)	373
DdeI	CTNAG	5 cut(s)	156, 193, 211, 238, 378
DpnI	GATC	2 cut(s)	444, 513
DpnII	GATC	2 cut(s)	442, 511
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	457, 507
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	376
FaqI	GGGAC	2 cut(s)	283, 290
FatI	CATG	1 cut(s)	372
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	2 cut(s)	302, 580
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	180, 371
HapII	CCGG	3 cut(s)	224, 417, 462
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	3 cut(s)	234, 296, 482
HpaII	CCGG	3 cut(s)	224, 417, 462
HphI	GGTGA	3 cut(s)	137, 340, 464
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	295, 355, 487
Hpy188III	TCNNGA	4 cut(s)	98, 162, 417, 566
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	307, 481
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	134, 267, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 335, 383
HpyF3I	CTNAG	5 cut(s)	156, 193, 211, 238, 378
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	442, 511
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	142, 217
MaeI	CTAG	2 cut(s)	302, 580
MaeII	ACGT	1 cut(s)	279
MalI	GATC	2 cut(s)	444, 513
MboI	GATC	2 cut(s)	442, 511
MboII	GAAGA	2 cut(s)	330, 568
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	2 cut(s)	344, 536
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	305, 476
MnlI	CCTC	3 cut(s)	220, 361, 540
Mox20I	TGGCCA	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	3 cut(s)	224, 417, 462
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	118, 335, 383
NciI	CCSGG	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	2 cut(s)	442, 511
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	4 cut(s)	179, 221, 251, 287
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	2 cut(s)	304, 476
PpsI	GAGTC	2 cut(s)	304, 476
PspN4I	GGNNCC	4 cut(s)	179, 221, 251, 287
PspPI	GGNCC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	2 cut(s)	442, 511
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	305, 476
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	142, 217
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	344, 536
SspMI	CTAG	2 cut(s)	302, 580
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	282
TasI	AATT	2 cut(s)	344, 536
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	109
TspRI	CASTG	1 cut(s)	123
XapI	RAATTY	2 cut(s)	344, 536
XspI	CTAG	2 cut(s)	302, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.