RchiOBHm_Chr7g0239801

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001698
Physical Location & Seq
Reverse (-)
65546105 .. 65549230
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21493

Sequence Viewer

Length: 948 bp
ATGCTAAGGAATTTGTTATGGGCCACATCAAAGCATGATGTATACCTGATGCAGAACTTCTCAGTGATGCATTGGAACTCTTTGCACAGGAGAGGCAGCGAAGTACTCAATGTGGCCAAACCAATTGTACCTACCGAGAAACAACCTGGGTTGTTGGCACGACCACTCTCTAGAGTGCAGATAAGCACTATGGCTGTCAAGGACAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAATGCCATCACTAATGCAGTGGATATTTTCCAAAACCCAACTGGCTCAATGAGGGTAATGACTGCAAATAATGATGCTCAAGTTAGAGTTTTTGACATTGAAAAGTTCGCTTGCCTCAACCGCTTCTCCTTTGAGTGGTCTGTAAATAACACCTCTGTTAGTCCCGATGGTAAGCTGCTTGCAGTACTTGGTGATAGTGCTGACTGTTTGATAGCTGATGCTCAGTCTGGAAAAGCTGTCGGGGGCTTGAAAGGGCACTTAGACTATTGCTTTTCTTCAGCTTGGCACCCGGATGGACGAATCTTGGCTACTGGGAACCAAGACACTACCTGTAGGCTATGGGACATAAGGAACCTGTCAGAGTCCCTAGCCGTGTTGAAGGGAAGAATGGGAGCAATAAGAGCTATAAAATTCACCTCTGATGGTCGTTTTATGGCCATGGCTGAGCCAGCAGACTTTGTTCACATCATTGATACCCAGTCTGGATATGCAAAGGGACAAGAGATTGATCTGTTTGGTGAGATTGCCGGAATATCCTTCAGCCCCGACTCTGAAGCTTTGTTTGTTGGAGTTGCTGATCGCACATATGGTAGTGTATTGGAGTTCAATAAGAGGCACTATAATCCCTATCAAGAAATAGTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

315

Amino Acids

34.74

Weight (kDa)

6.45

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 64 - 260 3.5e-19 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 109 - 287 1.1e-26 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 115 - 248 1e-12 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 116 - 221 2.5e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 118 - 295 1.2e-20 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 118 - 262 4.7e-16 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 118 - 223 4.4e-07 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 124 - 295 1.3e-13 WDR3 first beta-propeller domain
WDR55 PF24796 144 - 292 1.7e-07 WDR55
WD40_CDC20-Fz PF24807 151 - 286 1.9e-09 CDC20/Fizzy WD40 domain
WD40 PF00400 178 - 215 1.6e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 585
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 421
AcoI YGGCCR 2 cut(s) 114, 735
AcsI RAATTY 2 cut(s) 10, 710
AcuI CTGAAG 3 cut(s) 561, 823, 873
AfaI GTAC 3 cut(s) 105, 129, 486
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 4 cut(s) 401, 550, 679, 907
AjnI CCWGG 2 cut(s) 145, 262
AluBI AGCT 6 cut(s) 475, 515, 536, 581, 704, 857
AluI AGCT 6 cut(s) 475, 515, 536, 581, 704, 857
AoxI GGCC 3 cut(s) 21, 114, 735
ApeKI GCWGC 2 cut(s) 96, 475
ApoI RAATTY 2 cut(s) 10, 710
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 4 cut(s) 245, 503, 706, 830
BaeGI GKGCMC 1 cut(s) 558
BalI TGGCCA 2 cut(s) 116, 737
BanI GGYRCC 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 108, 462
BccI CCATC 4 cut(s) 314, 461, 587, 716
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 2 cut(s) 147, 264
BcnI CCSGG 1 cut(s) 590
BfaI CTAG 3 cut(s) 171, 668, 946
BfmI CTRYAG 1 cut(s) 631
BisI GCNGC 2 cut(s) 97, 476
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 2 cut(s) 98, 477
BmcAI AGTACT 2 cut(s) 105, 486
Bme1390I CCNGG 3 cut(s) 147, 264, 590
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 3 cut(s) 587, 617, 653
BmrFI CCNGG 3 cut(s) 147, 264, 590
BmrI ACTGGG 2 cut(s) 621, 772
BmsI GCATC 4 cut(s) 39, 57, 364, 508
BmuI ACTGGG 2 cut(s) 621, 772
BpiI GAAGAC 1 cut(s) 934
BpmI CTGGAG 1 cut(s) 285
Bpu10I CCTNAGC 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 146, 229, 738
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 3 cut(s) 346, 616, 778
BseBI CCWGG 2 cut(s) 147, 264
BseDI CCNNGG 3 cut(s) 146, 229, 738
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 75, 536, 735
BseNI ACTGG 3 cut(s) 346, 616, 778
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 2 cut(s) 108, 462
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 3 cut(s) 23, 116, 737
BshNI GGYRCC 1 cut(s) 585
BsiSI CCGG 2 cut(s) 590, 828
BslFI GGGAC 4 cut(s) 447, 649, 656, 810
BslI CCNNNNNNNGG 1 cut(s) 435
BsmFI GGGAC 4 cut(s) 447, 649, 656, 810
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 23, 116, 737
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 2 cut(s) 808, 877
Bsp1720I GCTNAGC 1 cut(s) 744
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 1 cut(s) 421
BspANI GGCC 3 cut(s) 23, 116, 737
BspCNI CTCAG 3 cut(s) 74, 535, 736
BspLI GGNNCC 3 cut(s) 587, 617, 653
BspT107I GGYRCC 1 cut(s) 585
BsrI ACTGG 3 cut(s) 346, 616, 778
BssECI CCNNGG 3 cut(s) 146, 229, 738
BssMI GATC 2 cut(s) 808, 877
BssNAI GTATAC 1 cut(s) 43
BssT1I CCWWGG 2 cut(s) 229, 738
Bst1107I GTATAC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 147, 264
Bst4CI ACNGT 1 cut(s) 506
BstC8I GCNNGC 4 cut(s) 248, 412, 480, 750
BstDEI CTNAG 5 cut(s) 5, 61, 522, 559, 744
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 2 cut(s) 811, 880
BstMBI GATC 2 cut(s) 808, 877
BstMWI GCNNNNNNNGC 3 cut(s) 420, 701, 749
BstNI CCWGG 2 cut(s) 147, 264
BstSCI CCNGG 3 cut(s) 145, 262, 588
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 108, 462
BstV2I GAAGAC 1 cut(s) 934
BstZ17I GTATAC 1 cut(s) 43
BsuRI GGCC 3 cut(s) 23, 116, 737
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 69, 324
Cac8I GCNNGC 4 cut(s) 248, 412, 480, 750
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 104, 128, 485
CviAII CATG 3 cut(s) 35, 253, 739
CviQI GTAC 3 cut(s) 104, 128, 485
DdeI CTNAG 5 cut(s) 5, 61, 522, 559, 744
DpnI GATC 2 cut(s) 810, 879
DpnII GATC 2 cut(s) 808, 877
EaeI YGGCCR 2 cut(s) 114, 735
Eco130I CCWWGG 2 cut(s) 229, 738
Eco57I CTGAAG 3 cut(s) 561, 823, 873
EcoRII CCWGG 2 cut(s) 145, 262
EcoT14I CCWWGG 2 cut(s) 229, 738
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 229, 738
FaeI CATG 3 cut(s) 38, 256, 742
FaqI GGGAC 4 cut(s) 447, 649, 656, 810
FatI CATG 3 cut(s) 34, 252, 738
FauNDI CATATG 1 cut(s) 886
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 97, 476
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 2 cut(s) 97, 476
FspBI CTAG 3 cut(s) 171, 668, 946
GluI GCNGC 2 cut(s) 97, 476
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 3 cut(s) 23, 116, 737
HapII CCGG 2 cut(s) 590, 828
Hin1II CATG 3 cut(s) 38, 256, 742
HindIII AAGCTT 1 cut(s) 855
HinfI GANTC 3 cut(s) 600, 662, 848
HpaII CCGG 2 cut(s) 590, 828
HphI GGTGA 4 cut(s) 245, 503, 706, 830
Hpy166II GTNNAC 3 cut(s) 43, 236, 763
Hpy188I TCNGA 3 cut(s) 661, 721, 853
Hpy188III TCNNGA 5 cut(s) 171, 464, 528, 783, 932
Hpy8I GTNNAC 3 cut(s) 43, 236, 763
HpyAV CCTTC 2 cut(s) 673, 847
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4V TGCA 9 cut(s) 52, 70, 85, 178, 246, 317, 365, 482, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 701, 749
HpyF3I CTNAG 5 cut(s) 5, 61, 522, 559, 744
Hsp92II CATG 3 cut(s) 38, 256, 742
Kzo9I GATC 2 cut(s) 808, 877
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 2 cut(s) 108, 462
LweI GCATC 4 cut(s) 39, 57, 364, 508
MaeI CTAG 3 cut(s) 171, 668, 946
MalI GATC 2 cut(s) 810, 879
MboI GATC 2 cut(s) 808, 877
MboII GAAGA 3 cut(s) 567, 696, 934
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 558
MlsI TGGCCA 2 cut(s) 116, 737
MluCI AATT 4 cut(s) 10, 123, 205, 710
MluNI TGGCCA 2 cut(s) 116, 737
MlyI GAGTC 2 cut(s) 671, 842
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 6 cut(s) 86, 345, 425, 463, 727, 906
Mox20I TGGCCA 2 cut(s) 116, 737
Mph1103I ATGCAT 1 cut(s) 72
MscI TGGCCA 2 cut(s) 116, 737
MslI CAYNNNNRTG 1 cut(s) 591
Msp20I TGGCCA 2 cut(s) 116, 737
MspI CCGG 2 cut(s) 590, 828
MspR9I CCNGG 3 cut(s) 147, 264, 590
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 147, 264
MwoI GCNNNNNNNGC 3 cut(s) 420, 701, 749
NciI CCSGG 1 cut(s) 590
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 886
NdeII GATC 2 cut(s) 808, 877
NlaIII CATG 3 cut(s) 38, 256, 742
NlaIV GGNNCC 3 cut(s) 587, 617, 653
NsiI ATGCAT 1 cut(s) 72
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 600
PkrI GCNGC 2 cut(s) 98, 477
PleI GAGTC 2 cut(s) 670, 842
PpsI GAGTC 2 cut(s) 670, 842
Psp6I CCWGG 2 cut(s) 145, 262
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 2 cut(s) 145, 262
PspN4I GGNNCC 3 cut(s) 587, 617, 653
PspPI GGNCC 1 cut(s) 21
RsaI GTAC 3 cut(s) 105, 129, 486
RsaNI GTAC 3 cut(s) 104, 128, 485
RseI CAYNNNNRTG 1 cut(s) 591
SatI GCNGC 2 cut(s) 97, 476
Sau3AI GATC 2 cut(s) 808, 877
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 2 cut(s) 105, 486
SchI GAGTC 2 cut(s) 671, 842
ScrFI CCNGG 3 cut(s) 147, 264, 590
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 4 cut(s) 39, 57, 364, 508
SfcI CTRYAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 4 cut(s) 10, 123, 205, 710
SsiI CCGC 1 cut(s) 421
SspMI CTAG 3 cut(s) 171, 668, 946
StyD4I CCNGG 3 cut(s) 145, 262, 588
StyI CCWWGG 2 cut(s) 229, 738
TaaI ACNGT 1 cut(s) 506
TasI AATT 4 cut(s) 10, 123, 205, 710
TatI WGTACW 2 cut(s) 103, 484
TfiI GAWTC 1 cut(s) 600
TscAI CASTG 2 cut(s) 69, 324
TseI GCWGC 2 cut(s) 96, 475
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 2 cut(s) 69, 324
XapI RAATTY 2 cut(s) 10, 710
XbaI TCTAGA 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 3 cut(s) 171, 668, 946
ZrmI AGTACT 2 cut(s) 105, 486
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.