Rmu_sc0000101.1_g000005

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000101.1
OG0001698
Physical Location & Seq
Reverse (-)
29012 .. 36979
7968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000101.1_g000005.1.cds

Sequence Viewer

Length: 1137 bp
atgttgattctttcaagtggcgacgcttttgctgataaccacccacggcgaagccgcgaggtcgtagacgacgactccgacgactttgtagacgaccttgattcggagtgcttgcaagtggagaaggggaagagtttctatgacttccaatacaacacaaggcttgtgaagttgacaattgtgcattttcagctaaggaacttgttatgggccacatcaaagcatgatgtttacctgatgcagaacttttctgtgatgcattggaactctttgcacagtagaggcatcgaagtaatcaatgtggctaaaccaattgtacctactgagaaacggccagggttgttggcacgaccactctctagagtgcagataagcactatggctgtcaaggaaaatttgttggttgctgggggcttccaaggtgaactaatctgcaaggctgttgggggcctcaaagggcacttagactattgcttttcttcagattggcacctggatggacgaatctgggctcctgggaaccaagacactacctgtaggctatgggacataaggaacctgtcacagtccctagccgtgttgaagggaagaatgggagcaataagagctatcaaattcacctctgatgctcgttttatggccatggctgagccagcagactttgttcacaacattgatacccagtccggatatgcaaagggacaagagattgatctgtctggtgagattgccggaatatccttcagccctgactctgaagctttgtttgttggggttgctgatcgcacatattcttgccatctcttctcgccaaatttccctcttccaatccccatagcaaatctaccttttctgaatcatgaacgtttgctcatatccacacaatttgactcccaccccgcctccgtcaccgctgagttttggatggagaacctgatctcactggtcaacaaaatccaaagagcttgcacagctctcgatgaccacggcaaaacccgcgcattaccgactctttgggactcgcttccctccatcgctgccgtcggtggccaggtcagctcccgattcattcctccaccttctcttttctctctgattgatccagctattcggactctgctttggtcagctgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

378

Amino Acids

42.07

Weight (kDa)

5.94

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AccI GTMKAC 2 cut(s) 66, 90
AccII CGCG 2 cut(s) 57, 999
AccIII TCCGGA 1 cut(s) 686
AciI CCGC 4 cut(s) 55, 900, 912, 997
AclI AACGTT 1 cut(s) 865
AclWI GGATC 1 cut(s) 1094
AcoI YGGCCR 3 cut(s) 332, 639, 1048
AcsI RAATTY 3 cut(s) 394, 614, 814
AcuI CTGAAG 3 cut(s) 465, 727, 777
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 15, 583
AjnI CCWGG 4 cut(s) 334, 492, 514, 1050
AluBI AGCT 8 cut(s) 193, 608, 761, 965, 974, 1059, 1106, 1130
AluI AGCT 8 cut(s) 193, 608, 761, 965, 974, 1059, 1106, 1130
AlwI GGATC 1 cut(s) 1094
Aor13HI TCCGGA 1 cut(s) 686
AoxI GGCC 5 cut(s) 210, 332, 448, 639, 1048
ApeKI GCWGC 1 cut(s) 1037
ApoI RAATTY 3 cut(s) 394, 614, 814
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 1001
AspS9I GGNCC 2 cut(s) 210, 448
AsuHPI GGTGA 4 cut(s) 434, 610, 734, 901
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 2 cut(s) 641, 1050
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 1024
BccI CCATC 4 cut(s) 491, 807, 919, 1040
BceAI ACGGC 5 cut(s) 62, 347, 560, 1003, 1025
BcgI CGANNNNNNTGC 4 cut(s) 11, 45, 958, 992
BciT130I CCWGG 4 cut(s) 336, 494, 516, 1052
BfaI CTAG 2 cut(s) 360, 572
BfmI CTRYAG 1 cut(s) 535
BisI GCNGC 2 cut(s) 55, 1038
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 2 cut(s) 56, 1039
Bme1390I CCNGG 4 cut(s) 336, 494, 516, 1052
BmgT120I GGNCC 2 cut(s) 210, 448
BmiI GGNNCC 5 cut(s) 449, 491, 513, 521, 557
BmrFI CCNGG 4 cut(s) 336, 494, 516, 1052
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 4 cut(s) 228, 246, 294, 616
BmuI ACTGGG 1 cut(s) 676
Bpu10I CCTNAGC 1 cut(s) 194
Bpu1102I GCTNAGC 1 cut(s) 648
BsaJI CCNNGG 6 cut(s) 44, 335, 418, 515, 642, 985
BsaWI WCCGGW 1 cut(s) 686
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 682, 948
BseAI TCCGGA 1 cut(s) 686
BseBI CCWGG 4 cut(s) 336, 494, 516, 1052
BseDI CCNNGG 6 cut(s) 44, 335, 418, 515, 642, 985
BseGI GGATG 2 cut(s) 502, 930
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 3 cut(s) 315, 639, 906
BseNI ACTGG 2 cut(s) 682, 948
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 1 cut(s) 1024
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 57, 999
BshFI GGCC 5 cut(s) 212, 334, 450, 641, 1050
BshNI GGYRCC 1 cut(s) 489
BsiSI CCGG 2 cut(s) 687, 732
BslFI GGGAC 4 cut(s) 553, 560, 714, 1031
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 4 cut(s) 553, 560, 714, 1031
BsnI GGCC 5 cut(s) 212, 334, 450, 641, 1050
Bsp1286I GDGCHC 2 cut(s) 462, 514
Bsp13I TCCGGA 1 cut(s) 686
Bsp143I GATC 4 cut(s) 712, 781, 936, 1099
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 4 cut(s) 55, 900, 912, 997
BspANI GGCC 5 cut(s) 212, 334, 450, 641, 1050
BspCNI CTCAG 3 cut(s) 316, 640, 907
BspEI TCCGGA 1 cut(s) 686
BspFNI CGCG 2 cut(s) 57, 999
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 5 cut(s) 449, 491, 513, 521, 557
BspPI GGATC 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 489
BsrI ACTGG 2 cut(s) 682, 948
BssECI CCNNGG 6 cut(s) 44, 335, 418, 515, 642, 985
BssMI GATC 4 cut(s) 712, 781, 936, 1099
BssT1I CCWWGG 2 cut(s) 418, 642
Bst2UI CCWGG 4 cut(s) 336, 494, 516, 1052
Bst4CI ACNGT 2 cut(s) 278, 567
Bst6I CTCTTC 3 cut(s) 125, 809, 828
BstC8I GCNNGC 3 cut(s) 113, 654, 967
BstDEI CTNAG 5 cut(s) 194, 324, 463, 648, 915
BstDSI CCRYGG 3 cut(s) 44, 642, 985
BstF5I GGATG 2 cut(s) 502, 930
BstFNI CGCG 2 cut(s) 57, 999
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 4 cut(s) 715, 784, 939, 1102
BstMBI GATC 4 cut(s) 712, 781, 936, 1099
BstMWI GCNNNNNNNGC 6 cut(s) 190, 605, 653, 971, 996, 1056
BstNI CCWGG 4 cut(s) 336, 494, 516, 1052
BstSCI CCNGG 4 cut(s) 334, 492, 514, 1050
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 2 cut(s) 57, 999
BstV1I GCAGC 1 cut(s) 1024
BsuRI GGCC 5 cut(s) 212, 334, 450, 641, 1050
BtgI CCRYGG 3 cut(s) 44, 642, 985
BtgZI GCGATG 1 cut(s) 1018
BtsCI GGATG 2 cut(s) 502, 930
BtsIMutI CAGTG 1 cut(s) 941
Cac8I GCNNGC 3 cut(s) 113, 654, 967
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 1001
Cfr13I GGNCC 2 cut(s) 210, 448
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 3 cut(s) 224, 643, 860
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 5 cut(s) 194, 324, 463, 648, 915
DpnI GATC 4 cut(s) 714, 783, 938, 1101
DpnII GATC 4 cut(s) 712, 781, 936, 1099
EaeI YGGCCR 3 cut(s) 332, 639, 1048
Eam1104I CTCTTC 3 cut(s) 125, 809, 828
EarI CTCTTC 3 cut(s) 125, 809, 828
Eco130I CCWWGG 2 cut(s) 418, 642
Eco24I GRGCYC 1 cut(s) 514
Eco57I CTGAAG 3 cut(s) 465, 727, 777
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 4 cut(s) 334, 492, 514, 1050
EcoT14I CCWWGG 2 cut(s) 418, 642
EcoT22I ATGCAT 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 418, 642
FaeI CATG 3 cut(s) 227, 646, 863
FaqI GGGAC 4 cut(s) 553, 560, 714, 1031
FatI CATG 3 cut(s) 223, 642, 859
FauI CCCGC 2 cut(s) 907, 1004
FblI GTMKAC 2 cut(s) 66, 90
Fnu4HI GCNGC 2 cut(s) 55, 1038
FokI GGATG 2 cut(s) 509, 937
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 2 cut(s) 55, 1038
FspBI CTAG 2 cut(s) 360, 572
GlaI GCGC 1 cut(s) 1000
GluI GCNGC 2 cut(s) 55, 1038
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 5 cut(s) 212, 334, 450, 641, 1050
HapII CCGG 2 cut(s) 687, 732
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 1001
Hin1II CATG 3 cut(s) 227, 646, 863
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HincII GTYRAC 2 cut(s) 174, 949
HindII GTYRAC 2 cut(s) 174, 949
HindIII AAGCTT 1 cut(s) 759
HpaII CCGG 2 cut(s) 687, 732
HphI GGTGA 4 cut(s) 434, 610, 734, 901
Hpy166II GTNNAC 7 cut(s) 67, 91, 174, 232, 425, 667, 949
Hpy188I TCNGA 8 cut(s) 79, 106, 484, 625, 757, 855, 1095, 1113
Hpy188III TCNNGA 5 cut(s) 360, 687, 860, 977, 1062
Hpy8I GTNNAC 7 cut(s) 67, 91, 174, 232, 425, 667, 949
Hpy99I CGWCG 4 cut(s) 26, 74, 83, 1046
HpyAV CCTTC 4 cut(s) 118, 577, 751, 1089
HpyCH4III ACNGT 2 cut(s) 278, 567
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 9 cut(s) 115, 184, 241, 259, 274, 367, 435, 695, 969
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 605, 653, 971, 996, 1056
HpyF3I CTNAG 5 cut(s) 194, 324, 463, 648, 915
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 3 cut(s) 227, 646, 863
HspAI GCGC 1 cut(s) 999
Kpn2I TCCGGA 1 cut(s) 686
Kzo9I GATC 4 cut(s) 712, 781, 936, 1099
LmnI GCTCC 3 cut(s) 517, 596, 1064
Lsp1109I GCAGC 1 cut(s) 1024
LweI GCATC 4 cut(s) 228, 246, 294, 616
MaeI CTAG 2 cut(s) 360, 572
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 2 cut(s) 561, 907
MalI GATC 4 cut(s) 714, 783, 938, 1101
MboI GATC 4 cut(s) 712, 781, 936, 1099
MboII GAAGA 5 cut(s) 142, 471, 600, 796, 815
MfeI CAATTG 2 cut(s) 177, 312
MhlI GDGCHC 2 cut(s) 462, 514
MlsI TGGCCA 2 cut(s) 641, 1050
MluCI AATT 6 cut(s) 177, 312, 394, 614, 814, 884
MluNI TGGCCA 2 cut(s) 641, 1050
MlyI GAGTC 6 cut(s) 68, 746, 884, 1003, 1013, 1108
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 52, 275, 461, 631, 831, 913, 1039, 1083
Mox20I TGGCCA 2 cut(s) 641, 1050
Mph1103I ATGCAT 1 cut(s) 261
MroI TCCGGA 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 2 cut(s) 641, 1050
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 2 cut(s) 641, 1050
MspA1I CMGCKG 2 cut(s) 914, 1130
MspI CCGG 2 cut(s) 687, 732
MspR9I CCNGG 4 cut(s) 336, 494, 516, 1052
MunI CAATTG 2 cut(s) 177, 312
MvaI CCWGG 4 cut(s) 336, 494, 516, 1052
MvnI CGCG 2 cut(s) 57, 999
MwoI GCNNNNNNNGC 6 cut(s) 190, 605, 653, 971, 996, 1056
NcoI CCATGG 1 cut(s) 642
NdeII GATC 4 cut(s) 712, 781, 936, 1099
NlaIII CATG 3 cut(s) 227, 646, 863
NlaIV GGNNCC 5 cut(s) 449, 491, 513, 521, 557
NmuCI GTSAC 2 cut(s) 561, 907
NsiI ATGCAT 1 cut(s) 261
PagI TCATGA 1 cut(s) 859
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 75, 78
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 5 cut(s) 7, 101, 504, 856, 1065
PkrI GCNGC 2 cut(s) 56, 1039
PleI GAGTC 6 cut(s) 68, 746, 884, 1003, 1013, 1108
PpsI GAGTC 6 cut(s) 68, 746, 884, 1003, 1013, 1108
Psp1406I AACGTT 1 cut(s) 865
Psp6I CCWGG 4 cut(s) 334, 492, 514, 1050
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 4 cut(s) 334, 492, 514, 1050
PspN4I GGNNCC 5 cut(s) 449, 491, 513, 521, 557
PspPI GGNCC 2 cut(s) 210, 448
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 495
SatI GCNGC 2 cut(s) 55, 1038
Sau3AI GATC 4 cut(s) 712, 781, 936, 1099
Sau96I GGNCC 2 cut(s) 210, 448
SchI GAGTC 6 cut(s) 68, 746, 884, 1003, 1013, 1108
ScrFI CCNGG 4 cut(s) 336, 494, 516, 1052
SduI GDGCHC 2 cut(s) 462, 514
SfaNI GCATC 4 cut(s) 228, 246, 294, 616
SfcI CTRYAG 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 495
Sse9I AATT 6 cut(s) 177, 312, 394, 614, 814, 884
SsiI CCGC 4 cut(s) 55, 900, 912, 997
SspMI CTAG 2 cut(s) 360, 572
StyD4I CCNGG 4 cut(s) 334, 492, 514, 1050
StyI CCWWGG 2 cut(s) 418, 642
TaaI ACNGT 2 cut(s) 278, 567
TaiI ACGT 1 cut(s) 868
TaqI TCGA 2 cut(s) 288, 978
TasI AATT 6 cut(s) 177, 312, 394, 614, 814, 884
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 5 cut(s) 7, 101, 504, 856, 1065
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 2 cut(s) 561, 907
TseI GCWGC 1 cut(s) 1037
Tsp45I GTSAC 2 cut(s) 561, 907
TspDTI ATGAA 2 cut(s) 876, 1057
TspGWI ACGGA 1 cut(s) 895
TspRI CASTG 1 cut(s) 948
XapI RAATTY 3 cut(s) 394, 614, 814
XbaI TCTAGA 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 66, 90
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 2 cut(s) 360, 572
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.