Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

30249974 .. 30250279

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGAATGGAACAAGGAAGGTGTTTCGCAAGATCTTTGAGCTCTTCTTATACACTCATCATCTCTACATTGTCTTCCTTGTCTTCTTCGTGTTTCGCGTGGGTTTCTCCTACGCTTGCATAATGCTGCCGGGCTTTTACCTCTTCCTGATTGATAGGTTCTTGCGTTTCTTGGAATGTCAGCGTAGAATTCGCGTGGTTTCAGCCCGTGTTCTTCCGTGTGAGGCTGTTGAGTTGAACTTCTCCAAGAGTCCAGGTGAGAAAACAAAGATGATCAATCCTACGCCCCAAATGAGCTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

102

Amino Acids

12.01

Weight (kDa)

10.03

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	99, 195
AcsI	RAATTY	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	7, 238
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	43, 297
AluI	AGCT	2 cut(s)	43, 297
Alw21I	GWGCWC	2 cut(s)	45, 299
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	45, 299
BbsI	GAAGAC	2 cut(s)	67, 76
Bbv12I	GWGCWC	2 cut(s)	45, 299
BbvI	GCAGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	132, 255
BmrFI	CCNGG	2 cut(s)	132, 255
BpiI	GAAGAC	2 cut(s)	67, 76
BpuMI	CCSGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	99, 195
BsiHKAI	GWGCWC	2 cut(s)	45, 299
BsiSI	CCGG	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	45, 299
Bsp143I	GATC	2 cut(s)	33, 273
BspFNI	CGCG	2 cut(s)	99, 195
BspQI	GCTCTTC	1 cut(s)	50
BssMI	GATC	2 cut(s)	33, 273
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	2 cut(s)	50, 149
BstC8I	GCNNGC	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	99, 195
BstKTI	GATC	2 cut(s)	36, 276
BstMBI	GATC	2 cut(s)	33, 273
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	130, 253
BstUI	CGCG	2 cut(s)	99, 195
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	67, 76
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	118
CviJI	RGCY	5 cut(s)	43, 135, 206, 227, 297
CviKI_1	RGCY	5 cut(s)	43, 135, 206, 227, 297
DpnI	GATC	2 cut(s)	35, 275
DpnII	GATC	2 cut(s)	33, 273
Eam1104I	CTCTTC	2 cut(s)	50, 149
EarI	CTCTTC	2 cut(s)	50, 149
Ecl136II	GAGCTC	2 cut(s)	43, 297
Eco24I	GRGCYC	2 cut(s)	45, 299
Eco53kI	GAGCTC	2 cut(s)	43, 297
EcoICRI	GAGCTC	2 cut(s)	43, 297
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	45, 299
FaiI	YATR	2 cut(s)	52, 122
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	45, 299
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	33, 273
LguI	GCTCTTC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	144, 161, 240, 267
Lsp1109I	GCAGC	1 cut(s)	114
MalI	GATC	2 cut(s)	35, 275
MboI	GATC	2 cut(s)	33, 273
MboII	GAAGA	6 cut(s)	37, 67, 76, 79, 136, 206
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	45, 299
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	152, 217
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	132, 255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	99, 195
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	33, 273
PciSI	GCTCTTC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
Psp124BI	GAGCTC	2 cut(s)	45, 299
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	33
SacI	GAGCTC	2 cut(s)	45, 299
SapI	GCTCTTC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	2 cut(s)	33, 273
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	132, 255
SduI	GDGCHC	2 cut(s)	45, 299
SetI	ASST	6 cut(s)	24, 45, 144, 161, 259, 299
Sse9I	AATT	1 cut(s)	189
SstI	GAGCTC	2 cut(s)	45, 299
StyD4I	CCNGG	2 cut(s)	130, 253
TasI	AATT	1 cut(s)	189
TseI	GCWGC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	207
XapI	RAATTY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.