Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

19658751 .. 19659699

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTGTTTGTAAATGTTACCAAATTTGATCCCAACAAGTTGAGTGTTGTGATCAAAAGAGAAGGAAATTGGTCTGAGAAATTGTATCAGGAATTGTCATCCTCTCTGCCCGCCACCCGCCCAGAGGTCTCAGTCGAAGGACTGTTGGGACCCGCCTCAAGCAACATGCTAAAGTGCTCACATTATCTGCCTTGCTATTTTTATGCCTTTTCTATAGCATCTGCAACAGTAGTTTTCTTATGGAACAAGAAACATAGCCTCAAGGAGATGGGGCAGATTCAACTCCTGGACACACCAACTCCAACGACTGCTTCTCCAAGTGGGCGGTTTTCCGTTGCTGAGCAAGAACTCGAAAGGATACGATTTGAGCGTGAAGGTTCAAGTATTGGGGTTCTTGTTAGTGGCCCAAGAAATATGAGGCAAGAAGTGGCTGCAATCTGTTCATCTGGCTTGGCCTACAACCAACATTACCATTCCATGAGCTTTCACGAGGTAAACCTCAAATACAAGAAAAGGAAAATGTTGTCATGGGTGATTGAGGACTTGACCTACGCGCGTATGTCATTGCATCCAAACATTAATTTGAGATACCCCCACAGCAATATAAGTGACACTAATTCGAAATACCGTCACAGTAATATTAATGCATGTATACGAAAATTAATTGGTTCGAAAAAGGCAAAGGAAAATTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

233

Amino Acids

26.45

Weight (kDa)

9.5

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	652
AccII	CGCG	2 cut(s)	554, 556
AciI	CCGC	4 cut(s)	111, 118, 153, 325
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	281, 381
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AluBI	AGCT	1 cut(s)	483
AluI	AGCT	1 cut(s)	483
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	403, 453
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	3 cut(s)	579, 642, 662
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	149, 404
AsuHPI	GGTGA	1 cut(s)	544
AsuII	TTCGAA	2 cut(s)	620, 671
AvaII	GGWCC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	432
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 404
BmiI	GGNNCC	2 cut(s)	150, 151
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	227, 577
Bpu1102I	GCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	2 cut(s)	620, 671
BpuEI	CTTGAG	2 cut(s)	142, 245
BsaI	GGTCTC	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 298, 313, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	98, 568
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	3 cut(s)	66, 144, 330
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	554, 556
BshFI	GGCC	2 cut(s)	405, 455
BsiHKAI	GWGCWC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	405, 455
Bso31I	GGTCTC	1 cut(s)	133
Bsp119I	TTCGAA	2 cut(s)	620, 671
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	28, 51
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	4 cut(s)	111, 118, 153, 325
BspANI	GGCC	2 cut(s)	405, 455
BspCNI	CTCAG	3 cut(s)	67, 143, 331
BspFNI	CGCG	2 cut(s)	554, 556
BspLI	GGNNCC	2 cut(s)	150, 151
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	2 cut(s)	620, 671
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	563
BssMI	GATC	2 cut(s)	28, 51
BssNAI	GTATAC	1 cut(s)	653
BssSI	CACGAG	1 cut(s)	488
Bst1107I	GTATAC	1 cut(s)	653
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	144, 229, 629, 635
BstBI	TTCGAA	2 cut(s)	620, 671
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	75, 130, 339
BstF5I	GGATG	2 cut(s)	98, 568
BstFNI	CGCG	2 cut(s)	554, 556
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	2 cut(s)	31, 54
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	28, 51
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	169, 651
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	554, 556
BstV1I	GCAGC	1 cut(s)	418
BstZ17I	GTATAC	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	405, 455
BtsCI	GGATG	2 cut(s)	98, 568
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	149, 404
CviAII	CATG	4 cut(s)	166, 478, 528, 648
CviJI	RGCY	6 cut(s)	258, 405, 431, 450, 455, 483
CviKI_1	RGCY	6 cut(s)	258, 405, 431, 450, 455, 483
DdeI	CTNAG	3 cut(s)	75, 130, 339
DpnI	GATC	2 cut(s)	30, 53
DpnII	GATC	2 cut(s)	28, 51
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	649
FaeI	CATG	4 cut(s)	169, 481, 531, 651
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	165, 477, 527, 647
FauI	CCCGC	3 cut(s)	118, 125, 160
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	85, 555
Fsp4HI	GCNGC	1 cut(s)	432
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	405, 455
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	169, 481, 531, 651
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	496, 653
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	89, 488
Hpy8I	GTNNAC	2 cut(s)	496, 653
HpyAV	CCTTC	3 cut(s)	56, 131, 368
HpyCH4III	ACNGT	4 cut(s)	144, 229, 629, 635
HpyCH4V	TGCA	4 cut(s)	224, 434, 568, 647
HpyF3I	CTNAG	3 cut(s)	75, 130, 339
Hsp92II	CATG	4 cut(s)	169, 481, 531, 651
HspAI	GCGC	1 cut(s)	554
KflI	GGGWCCC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	28, 51
LpnPI	CCDG	5 cut(s)	74, 135, 272, 299, 432
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	227, 577
MaeIII	GTNAC	3 cut(s)	16, 608, 629
MalI	GATC	2 cut(s)	30, 53
MboI	GATC	2 cut(s)	28, 51
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	9 cut(s)	23, 67, 80, 92, 580, 616, 659, 663, 688
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	8 cut(s)	112, 118, 166, 269, 411, 484, 509, 532
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	3 cut(s)	579, 642, 662
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	554, 556
NdeII	GATC	2 cut(s)	28, 51
NlaIII	CATG	4 cut(s)	169, 481, 531, 651
NlaIV	GGNNCC	2 cut(s)	150, 151
NmuCI	GTSAC	2 cut(s)	608, 629
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	2 cut(s)	169, 651
NspV	TTCGAA	2 cut(s)	620, 671
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	149
PshBI	ATTAAT	3 cut(s)	579, 642, 662
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	150, 151
PspPI	GGNCC	2 cut(s)	149, 404
PspPPI	RGGWCCY	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	579, 642, 662
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	28, 51
Sau96I	GGNCC	2 cut(s)	149, 404
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	6 cut(s)	129, 379, 485, 495, 501, 551
SfaNI	GCATC	2 cut(s)	227, 577
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	2 cut(s)	620, 671
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	157, 260
SmoI	CTYRAG	2 cut(s)	157, 260
Sse9I	AATT	9 cut(s)	23, 67, 80, 92, 580, 616, 659, 663, 688
SsiI	CCGC	4 cut(s)	111, 118, 153, 325
SspI	AATATT	1 cut(s)	640
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	144, 229, 629, 635
TaqI	TCGA	4 cut(s)	135, 351, 620, 671
TasI	AATT	9 cut(s)	23, 67, 80, 92, 580, 616, 659, 663, 688
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	579, 642, 662
Tru9I	TTAA	3 cut(s)	579, 642, 662
TseFI	GTSAC	2 cut(s)	608, 629
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	2 cut(s)	608, 629
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	3 cut(s)	579, 642, 662
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	2 cut(s)	169, 651
XmiI	GTMKAC	1 cut(s)	652
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.