Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8127120.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

103 .. 531

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8127120.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgataaaatgggagaaaactggcatatcaaacatagcgggagagctagctttgctctctggacttgccctgtgggtggctacaatccctcgcattaggcgcaaaatgtttgagctcttcttctacacacactacctttacatcccgttcatggtcttcttcatctttcatgtcggtgtcggctatgctggcattatgctccctggcttcttcctcttcatggttgatcgttacctacgattcttgcaatccgagagaagagcacgtttagtctctgcccgaatcttgccgggtgaatctctagaactcaactttgccaaaagtccgggtacgtacttgttaacatcttctagttatgttcttatgttctctggtcagacagtgccaaaccattcagcaagtaaactcttgtatgaatgtgcggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

9.67

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 422
AfaI	GTAC	2 cut(s)	331, 335
AfiI	CCNNNNNNNGG	3 cut(s)	76, 151, 220
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	46, 50, 115
AluI	AGCT	3 cut(s)	46, 50, 115
Alw21I	GWGCWC	2 cut(s)	117, 265
Alw26I	GTCTC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	102
AsuC2I	CCSGG	2 cut(s)	291, 327
AsuHPI	GGTGA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	117, 265
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	291, 327
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	47, 302, 351
Bme1390I	CCNGG	3 cut(s)	204, 291, 327
BmrFI	CCNGG	3 cut(s)	204, 291, 327
BmtI	GCTAGC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	291, 327
BsaAI	YACGTR	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 151, 220
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	76, 151, 220
BseNI	ACTGG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	117, 265
BsiSI	CCGG	2 cut(s)	290, 326
BslI	CCNNNNNNNGG	3 cut(s)	76, 151, 220
BsmAI	GTCTC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	117, 265
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	38, 422
BspOI	GCTAGC	1 cut(s)	50
BspQI	GCTCTTC	2 cut(s)	122, 253
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	122, 221, 253
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	48, 190
BstF5I	GGATG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	202, 289, 325
BstSNI	TACGTA	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	48, 190
CfoI	GCGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	330, 334
CviAII	CATG	3 cut(s)	151, 170, 220
CviJI	RGCY	6 cut(s)	46, 50, 80, 115, 183, 207
CviKI_1	RGCY	6 cut(s)	46, 50, 80, 115, 183, 207
CviQI	GTAC	2 cut(s)	330, 334
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	3 cut(s)	122, 221, 253
EarI	CTCTTC	3 cut(s)	122, 221, 253
Ecl136II	GAGCTC	1 cut(s)	115
Eco105I	TACGTA	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	3 cut(s)	154, 173, 223
FatI	CATG	3 cut(s)	150, 169, 219
FauI	CCCGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	3 cut(s)	47, 302, 351
GlaI	GCGC	1 cut(s)	101
HapII	CCGG	2 cut(s)	290, 326
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	154, 173, 223
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	3 cut(s)	240, 282, 296
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	290, 326
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	342, 404
Hpy188I	TCNGA	2 cut(s)	253, 378
Hpy188III	TCNNGA	2 cut(s)	60, 302
Hpy8I	GTNNAC	2 cut(s)	342, 404
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	265, 332
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
HpySE526I	ACGT	2 cut(s)	265, 332
Hsp92II	CATG	3 cut(s)	154, 173, 223
HspAI	GCGC	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	226
LguI	GCTCTTC	2 cut(s)	122, 253
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	9 cut(s)	6, 45, 83, 174, 189, 216, 303, 339, 357
MaeI	CTAG	3 cut(s)	47, 302, 351
MaeII	ACGT	2 cut(s)	265, 332
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	8 cut(s)	109, 112, 148, 151, 202, 208, 270, 339
MhlI	GDGCHC	2 cut(s)	117, 265
MnlI	CCTC	2 cut(s)	99, 224
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	2 cut(s)	290, 326
MspR9I	CCNGG	3 cut(s)	204, 291, 327
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
NciI	CCSGG	2 cut(s)	291, 327
NdeII	GATC	1 cut(s)	226
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	154, 173, 223
PciSI	GCTCTTC	2 cut(s)	122, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	240, 282, 296
Ppu21I	YACGTR	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	331, 335
RsaNI	GTAC	2 cut(s)	330, 334
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	2 cut(s)	122, 253
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	3 cut(s)	204, 291, 327
SduI	GDGCHC	2 cut(s)	117, 265
SetI	ASST	7 cut(s)	48, 52, 117, 138, 237, 268, 335
SmiMI	CAYNNNNRTG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	333
SsiI	CCGC	2 cut(s)	38, 422
SspMI	CTAG	3 cut(s)	47, 302, 351
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	202, 289, 325
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	268, 335
TfiI	GAWTC	3 cut(s)	240, 282, 296
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	387
TspDTI	ATGAA	5 cut(s)	139, 151, 158, 208, 429
TspRI	CASTG	1 cut(s)	387
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	3 cut(s)	47, 302, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.