Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000166.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

94371 .. 95686

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000166.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgataaaatgggagaaaactggcatatcaaacatagcgggagagctagctttgctctctggacttgccctgtgggtggctacaatccctcgcattaggcgcaaaatgtttgagctcttcttctacacacactacctttacatcccgttcatggtcttcttcatctttcatgtcggtgtcggctatgctggcattatgctccctggcttcttcctcttcatggttgatcgttacctacgattcttgcaatacgagagaagagcacgtttagtctctgcccgaatcttgccgggtgaatctctagaactcaactttgccaaaagtccgggtacgtacttgttaacatcttctagttatgttcttatgttctctggtcagacagtgccaaaccattcagcaagtaaactctataacttggagccagagaagatcagtgtcgtcattaaaggtgaaggaagttggaccaggaagctttaccaagtcctttcgtcgccttctacaagtgctcggattgaggctgctgttgaaggaccttatggacctgatgcaactcattttctaaggcatgacaatcttgtgttggtgagtggaggcagtggcattacccctttcatatccataattcgcgagcttatttttatgtccacggccttccaacccaagcttccgaaagtgaccttaatctggattctatttgagtgcaaaggatcaaatattggggttcttgctagtggaccgaagaagatgaggcatgaggttgcaaccatttgttcatctggtttggcagaaaatatgcattttgagtctatcagctttagctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

274

Amino Acids

30.81

Weight (kDa)

9.47

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	627
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	715
AfaI	GTAC	2 cut(s)	331, 335
AfiI	CCNNNNNNNGG	4 cut(s)	76, 151, 220, 684
AgsI	TTSAA	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	202, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	8 cut(s)	46, 50, 115, 472, 631, 664, 813, 819
AluI	AGCT	8 cut(s)	46, 50, 115, 472, 631, 664, 813, 819
Alw21I	GWGCWC	3 cut(s)	117, 265, 508
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	4 cut(s)	462, 530, 539, 734
AsuC2I	CCSGG	2 cut(s)	291, 327
AsuHPI	GGTGA	3 cut(s)	305, 461, 595
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	4 cut(s)	462, 530, 539, 734
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	117, 265, 508
BbvI	GCAGC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	2 cut(s)	204, 466
BcnI	CCSGG	2 cut(s)	291, 327
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	4 cut(s)	47, 302, 351, 729
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	204, 291, 327, 466
Bme18I	GGWCC	4 cut(s)	462, 530, 539, 734
BmgT120I	GGNCC	4 cut(s)	462, 530, 539, 734
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	4 cut(s)	204, 291, 327, 466
BmsI	GCATC	1 cut(s)	535
BmtI	GCTAGC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	291, 327
BsaAI	YACGTR	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	202, 645
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 151, 220, 684
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	204, 466
BseDI	CCNNGG	2 cut(s)	202, 645
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	76, 151, 220, 684
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	650
BsiHKAI	GWGCWC	3 cut(s)	117, 265, 508
BsiSI	CCGG	2 cut(s)	290, 326
BslI	CCNNNNNNNGG	4 cut(s)	76, 151, 220, 684
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	117, 265, 508
Bsp143I	GATC	3 cut(s)	226, 429, 707
Bsp68I	TCGCGA	1 cut(s)	627
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	650
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	715
BspQI	GCTCTTC	2 cut(s)	122, 253
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	202, 645
BssMI	GATC	3 cut(s)	226, 429, 707
Bst2UI	CCWGG	2 cut(s)	204, 466
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	122, 221, 253
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	48, 190, 629
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	229, 432, 710
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	226, 429, 707
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
BstNI	CCWGG	2 cut(s)	204, 466
BstSCI	CCNGG	4 cut(s)	202, 289, 325, 464
BstSNI	TACGTA	1 cut(s)	333
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	387, 439, 601
BtuMI	TCGCGA	1 cut(s)	627
Cac8I	GCNNGC	3 cut(s)	48, 190, 629
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	462, 530, 539, 734
Csp6I	GTAC	2 cut(s)	330, 334
CviAII	CATG	5 cut(s)	151, 170, 220, 566, 752
CviQI	GTAC	2 cut(s)	330, 334
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	228, 431, 709
DpnII	GATC	3 cut(s)	226, 429, 707
Eam1104I	CTCTTC	3 cut(s)	122, 221, 253
EarI	CTCTTC	3 cut(s)	122, 221, 253
Ecl136II	GAGCTC	1 cut(s)	115
Eco105I	TACGTA	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	4 cut(s)	462, 530, 539, 734
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	202, 464
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	5 cut(s)	154, 173, 223, 569, 755
FatI	CATG	5 cut(s)	150, 169, 219, 565, 751
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	4 cut(s)	47, 302, 351, 729
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	2 cut(s)	290, 326
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	5 cut(s)	154, 173, 223, 569, 755
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	2 cut(s)	470, 662
HinfI	GANTC	5 cut(s)	240, 282, 296, 688, 803
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	290, 326
HphI	GGTGA	3 cut(s)	305, 461, 595
Hpy166II	GTNNAC	4 cut(s)	342, 404, 645, 734
Hpy188I	TCNGA	3 cut(s)	378, 510, 669
Hpy188III	TCNNGA	4 cut(s)	60, 302, 626, 685
Hpy8I	GTNNAC	4 cut(s)	342, 404, 645, 734
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	4 cut(s)	446, 504, 521, 661
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	265, 332
HpyCH4V	TGCA	5 cut(s)	247, 548, 702, 761, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	2 cut(s)	265, 332
Hsp92II	CATG	5 cut(s)	154, 173, 223, 569, 755
HspAI	GCGC	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	226, 429, 707
LguI	GCTCTTC	2 cut(s)	122, 253
LmnI	GCTCC	2 cut(s)	204, 418
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	4 cut(s)	47, 302, 351, 729
MaeII	ACGT	2 cut(s)	265, 332
MaeIII	GTNAC	2 cut(s)	230, 673
MalI	GATC	3 cut(s)	228, 431, 709
MboI	GATC	3 cut(s)	226, 429, 707
MhlI	GDGCHC	3 cut(s)	117, 265, 508
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	440, 679
MnlI	CCTC	6 cut(s)	99, 224, 508, 584, 741, 748
Mph1103I	ATGCAT	1 cut(s)	798
MseI	TTAA	3 cut(s)	341, 444, 680
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	2 cut(s)	290, 326
MspR9I	CCNGG	4 cut(s)	204, 291, 327, 466
MvaI	CCWGG	2 cut(s)	204, 466
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	3 cut(s)	52, 99, 189
NciI	CCSGG	2 cut(s)	291, 327
NdeII	GATC	3 cut(s)	226, 429, 707
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	5 cut(s)	154, 173, 223, 569, 755
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	673
NruI	TCGCGA	1 cut(s)	627
NsiI	ATGCAT	1 cut(s)	798
PciSI	GCTCTTC	2 cut(s)	122, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PfeI	GAWTC	4 cut(s)	240, 282, 296, 688
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	202, 464
PspGI	CCWGG	2 cut(s)	202, 464
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	4 cut(s)	462, 530, 539, 734
PspPPI	RGGWCCY	1 cut(s)	530
RruI	TCGCGA	1 cut(s)	627
RsaI	GTAC	2 cut(s)	331, 335
RsaNI	GTAC	2 cut(s)	330, 334
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	2 cut(s)	122, 253
SaqAI	TTAA	3 cut(s)	341, 444, 680
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	226, 429, 707
Sau96I	GGNCC	4 cut(s)	462, 530, 539, 734
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	4 cut(s)	204, 291, 327, 466
SduI	GDGCHC	3 cut(s)	117, 265, 508
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	4 cut(s)	462, 530, 539, 734
SmiMI	CAYNNNNRTG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	333
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	1 cut(s)	38
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	4 cut(s)	47, 302, 351, 729
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	202, 289, 325, 464
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	268, 335
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	1 cut(s)	621
TfiI	GAWTC	4 cut(s)	240, 282, 296, 688
Tru1I	TTAA	3 cut(s)	341, 444, 680
Tru9I	TTAA	3 cut(s)	341, 444, 680
TscAI	CASTG	3 cut(s)	387, 439, 601
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	6 cut(s)	139, 151, 158, 208, 601, 762
TspRI	CASTG	3 cut(s)	387, 439, 601
VpaK11BI	GGWCC	4 cut(s)	462, 530, 539, 734
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	4 cut(s)	47, 302, 351, 729
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.