Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

49325159 .. 49329784

Gene Structure 4626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGATTCAAATGTGGTGGTCAGAAGCTCATCACCTCCGTCCCATGAAGGAATCAGAATGGTACGGACAGCTATACGGCTGTTTTTAGTGTTGGTGGTGTTTGGAGGGTGTGTTTTGATCTATGTCATGATGCCCACAAACACATATAGGCAAATATGGCTGCCTCGAATCCGAGCTGAGGCCGGCTCAAGTACCTATTTTGGAGCGCAAGGTTCAACTCTTCTGTTTTACACATTTCCCATTATGTTCATTGCTGTGATGGGTTGTGTGTATCTCCATCTGGGAAAGAAGATTACTGATTATAAAATCGAAAGTGATGGCAAAACGAACCGTATAGCTGTGTGGAAACAGCCCATGCTGGTGAAAGGTCCTTTAGGCATTGTTTCTGGGATAGAGCTCACCTTCTTCATCATGTTCATTGCACTCCTAATTTGGTCTATCTCCACGTACTTGACCAATGGTTTTAAGATAATCACACCACAATCCGCCGCAAAGAGCCATGAAAAAGTATGGGAAGCTAAATTGGAGAGTGCATCATTGAGGCTAGGGGTTGTGGGTAACATATGCCTTTCACTTCTCTTCTTTCCGGTCGCTCGTGGCTCCTCGATCTTGCCTCTGTTTGGCCTCACCTCCGAGGCTAGCATCAAGTACCATATATGGGTAGGAAACATACTAATGGTGCTCTTTACAGCTCATGGAACTTGTTACATCATATATTGGGCTGTCACAGATCAAATTTCCCAGATGATAAAATGGGAGAAAACTGGCATATCAAACATAGCGGGAGAGCTAGCTTTGCTCTCTGGACTTGCCCTGTGGGTGGCTACAATCCCTCGCATTAGGCGCAAAATGTTTGAGCTCTTCTTCTACACACACTACCTTTACATCCCGTTCATGGTCTTCTTCATCTTTCATGTCGGTGTCGGCTATGCTGGCATTATGCTCCCTGGCTTCTTCCTCTTCATGGTTGATCGTTACCTACGATTCTTGCAATCCGAGAGAAGAGCACGTTTAGTCTCTGCCCGAATCTTGCCGGGTGAATCTCTAGAACTCAACTTTGCCAAAAGTCCGGGTTTGAAATACAATCCAACAAGCGTCATGTTCATAAATGTGCCTAGTATTTCCAAGCTGCAATGGCATCCTTACACTGTTACTTCAAACAGTAACTTGGAGCCAGAGAAGATCAGTGTCGTCATTAAAGGTGAAGGAAGTTGGACCAGGAAGCTTTACCAAGTCCTTTCGTCGCCTTCTACAAGTGCTCGGATTGAGGCTGCTGTTGAAGGACCTTATGGACCTGATGCAACTCATTTTCTAAGGCATGACAATCTTGTGTTGGTGAGTGGAGGCAGTGGCATTACCCCTTTCATATCCATAATTCGCGAGCTTATTTTTATGTCCACGGCCTTCCAATCCAAGCTTCCGAAAGTGACCTTAATCTGTGCATTTAAACACTCTTCGGACCTCACAATGCTAGACCTGATTCTACCAATGTCTACCACCACACCATATGACATTTCCAATCTCCAGATACAAATTGAGACATATGTAACAAGAGACACACAGCCAAAAGATAACTCAATGAACCTCAGAAGCATATGGTTCAAACCCCTTGCAACTGATGAACCCGTTTCAGCCATTTTGGGACCAAACCACTGGCTCTGGCTTGGCCTGATCATAACATCTTCCTTCATGATGTTCCTCATCTTGATTGGGATCGTCACCAGATATTACATTTTTCCGATCGATCACAACTCCAATAAGATTTTTTCGTCTCCTTTGAGGGCTTTGTTTAATATGTTGGCTATATGCATGTCCATAGCGGCAACAGCTAGTGCAGCAATGTTGTGGAACAAGGGAAGTAATGCCAAGGAGTTAAAGCAGGTTCAGCACATAGAAGCCTCACCACCAAGGGGTTCAGAGGTTTATAATGCAGAAAGAGAGTTAGAAAGCCTTCCTCAACAGTCCCTTGTCCAAGCCACCAATGTGCACTATGGTCAAAGGCCTGACCTCAAGAGGATTCTATTTGAGTGCAAAGGATCAAGTGTTGGGGTTCTTGCTAGTGGACCGAAGAAGATGAGGCATGAGGTTGCAACCATTTGTTCATCTGGTTTGGCAGAAAATATGCATTTTGAATCCATCAGCTTTAGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

717

Amino Acids

80.39

Weight (kDa)

9.38

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	182 - 302	1.8e-20	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	336 - 433	4.2e-23	FAD-binding domain
NAD_binding_6	PF08030	440 - 700	2.1e-20	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	303, 1926
Acc36I	ACCTGC	1 cut(s)	1870
AccI	GTMKAC	1 cut(s)	1493
AccII	CGCG	1 cut(s)	1380
AciI	CCGC	4 cut(s)	486, 489, 782, 1820
AclWI	GGATC	2 cut(s)	1721, 2044
AcsI	RAATTY	1 cut(s)	735
AfaI	GTAC	4 cut(s)	63, 193, 449, 650
AfiI	CCNNNNNNNGG	7 cut(s)	178, 620, 658, 820, 895, 964, 1910
AgsI	TTSAA	7 cut(s)	9, 216, 1078, 1158, 1280, 1603, 2132
AjnI	CCWGG	2 cut(s)	946, 1217
AjuI	GAANNNNNNNTTGG	2 cut(s)	1401, 1433
AleI	CACNNNNGTG	1 cut(s)	1982
Alw21I	GWGCWC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
Alw26I	GTCTC	4 cut(s)	1021, 1532, 1548, 1776
Alw44I	GTGCAC	1 cut(s)	1985
AlwI	GGATC	2 cut(s)	1721, 2044
AoxI	GGCC	5 cut(s)	180, 622, 1401, 1666, 2000
ApaLI	GTGCAC	1 cut(s)	1985
ApeKI	GCWGC	4 cut(s)	160, 1129, 1271, 1835
ApoI	RAATTY	1 cut(s)	735
Asp700I	GAANNNNTTC	1 cut(s)	1950
AspLEI	GCGC	2 cut(s)	208, 846
AspS9I	GGNCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
AsuC2I	CCSGG	2 cut(s)	1035, 1071
AsuHPI	GGTGA	9 cut(s)	24, 373, 391, 619, 1049, 1214, 1348, 1711, 1893
AsuNHI	GCTAGC	2 cut(s)	638, 790
AvaII	GGWCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
BaeGI	GKGCMC	1 cut(s)	1989
BanII	GRGCYC	2 cut(s)	399, 861
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	892
Bbv12I	GWGCWC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	147, 1116, 1258, 1847
BccI	CCATC	4 cut(s)	253, 285, 311, 2144
BceAI	ACGGC	2 cut(s)	92, 1416
BciT130I	CCWGG	2 cut(s)	948, 1219
BclI	TGATCA	1 cut(s)	1671
BcnI	CCSGG	2 cut(s)	1035, 1071
BcoDI	GTCTC	4 cut(s)	1021, 1532, 1548, 1776
BfaI	CTAG	8 cut(s)	545, 639, 791, 1046, 1116, 1472, 1830, 2058
BfuAI	ACCTGC	1 cut(s)	1870
BisI	GCNGC	6 cut(s)	161, 489, 1130, 1272, 1821, 1836
BlsI	GCNGC	6 cut(s)	162, 490, 1131, 1273, 1822, 1837
Bme1390I	CCNGG	4 cut(s)	948, 1035, 1071, 1219
Bme18I	GGWCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
BmgT120I	GGNCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
BmiI	GGNNCC	3 cut(s)	601, 1173, 1644
BmrFI	CCNGG	4 cut(s)	948, 1035, 1071, 1219
BmsI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
BmtI	GCTAGC	2 cut(s)	642, 794
BpiI	GAAGAC	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	1508
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	172, 1994
BpuMI	CCSGG	2 cut(s)	1035, 1071
Bsa29I	ATCGAT	1 cut(s)	1743
BsaAI	YACGTR	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	1712
BsaJI	CCNNGG	5 cut(s)	633, 946, 1398, 1866, 1907
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	7 cut(s)	178, 620, 658, 820, 895, 964, 1910
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	769, 1658
Bse3DI	GCAATG	4 cut(s)	249, 417, 1139, 1845
Bse8I	GATNNNNATC	1 cut(s)	1712
BseBI	CCWGG	2 cut(s)	948, 1219
BseCI	ATCGAT	1 cut(s)	1743
BseDI	CCNNGG	5 cut(s)	633, 946, 1398, 1866, 1907
BseGI	GGATG	2 cut(s)	885, 1138
BseJI	GATNNNNATC	1 cut(s)	1712
BseLI	CCNNNNNNNGG	7 cut(s)	178, 620, 658, 820, 895, 964, 1910
BseMI	GCAATG	4 cut(s)	249, 417, 1139, 1845
BseMII	CTCAG	2 cut(s)	168, 1600
BseNI	ACTGG	2 cut(s)	769, 1658
BseRI	GAGGAG	1 cut(s)	592
BseSI	GKGCMC	1 cut(s)	1989
BseXI	GCAGC	4 cut(s)	147, 1116, 1258, 1847
BsgI	GTGCAG	1 cut(s)	1854
Bsh1236I	CGCG	1 cut(s)	1380
Bsh1285I	CGRYCG	2 cut(s)	591, 1743
BshFI	GGCC	5 cut(s)	182, 624, 1403, 1668, 2002
BshVI	ATCGAT	1 cut(s)	1743
BsiEI	CGRYCG	2 cut(s)	591, 1743
BsiHKAI	GWGCWC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
BsiSI	CCGG	4 cut(s)	183, 587, 1034, 1070
BslFI	GGGAC	3 cut(s)	25, 1656, 1948
BslI	CCNNNNNNNGG	7 cut(s)	178, 620, 658, 820, 895, 964, 1910
BsmAI	GTCTC	4 cut(s)	1021, 1532, 1548, 1776
BsmBI	CGTCTC	1 cut(s)	1776
BsmFI	GGGAC	3 cut(s)	25, 1656, 1948
BsnI	GGCC	5 cut(s)	182, 624, 1403, 1668, 2002
Bsp1286I	GDGCHC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
Bsp68I	TCGCGA	1 cut(s)	1380
BspACI	CCGC	4 cut(s)	486, 489, 782, 1820
BspANI	GGCC	5 cut(s)	182, 624, 1403, 1668, 2002
BspCNI	CTCAG	2 cut(s)	169, 1599
BspDI	ATCGAT	1 cut(s)	1743
BspFNI	CGCG	1 cut(s)	1380
BspHI	TCATGA	2 cut(s)	126, 1689
BspLI	GGNNCC	3 cut(s)	601, 1173, 1644
BspMI	ACCTGC	1 cut(s)	1870
BspOI	GCTAGC	2 cut(s)	642, 794
BspPI	GGATC	2 cut(s)	1721, 2044
BspQI	GCTCTTC	2 cut(s)	866, 997
BsrDI	GCAATG	4 cut(s)	249, 417, 1139, 1845
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	769, 1658
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	5 cut(s)	633, 946, 1398, 1866, 1907
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	1866, 1907
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	948, 1219
Bst4CI	ACNGT	4 cut(s)	332, 1150, 1163, 1962
Bst6I	CTCTTC	6 cut(s)	225, 584, 866, 965, 997, 1459
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	5 cut(s)	184, 640, 792, 934, 1382
BstDEI	CTNAG	3 cut(s)	177, 1313, 1586
BstDSI	CCRYGG	1 cut(s)	1398
BstF5I	GGATG	2 cut(s)	885, 1138
BstFNI	CGCG	1 cut(s)	1380
BstHHI	GCGC	2 cut(s)	208, 846
BstMAI	GTCTC	4 cut(s)	1021, 1532, 1548, 1776
BstMCI	CGRYCG	2 cut(s)	591, 1743
BstMWI	GCNNNNNNNGC	8 cut(s)	157, 796, 843, 933, 1135, 1826, 1835, 1885
BstNI	CCWGG	2 cut(s)	948, 1219
BstNSI	RCATGY	1 cut(s)	1813
BstSCI	CCNGG	4 cut(s)	946, 1033, 1069, 1217
BstSLI	GKGCMC	1 cut(s)	1989
BstUI	CGCG	1 cut(s)	1380
BstV1I	GCAGC	4 cut(s)	147, 1116, 1258, 1847
BstV2I	GAAGAC	1 cut(s)	892
BstXI	CCANNNNNNTGG	1 cut(s)	1653
Bsu15I	ATCGAT	1 cut(s)	1743
BsuRI	GGCC	5 cut(s)	182, 624, 1403, 1668, 2002
BsuTUI	ATCGAT	1 cut(s)	1743
BtgI	CCRYGG	1 cut(s)	1398
BtsCI	GGATG	2 cut(s)	885, 1138
BtsI	GCAGTG	1 cut(s)	1354
BtsIMutI	CAGTG	4 cut(s)	1146, 1192, 1354, 1651
BtuMI	TCGCGA	1 cut(s)	1380
BveI	ACCTGC	1 cut(s)	1870
Cac8I	GCNNGC	5 cut(s)	184, 640, 792, 934, 1382
CciI	TCATGA	2 cut(s)	126, 1689
CfoI	GCGC	2 cut(s)	208, 846
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
ClaI	ATCGAT	1 cut(s)	1743
CseI	GACGC	1 cut(s)	1084
Csp6I	GTAC	4 cut(s)	62, 192, 448, 649
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviQI	GTAC	4 cut(s)	62, 192, 448, 649
DdeI	CTNAG	3 cut(s)	177, 1313, 1586
DraI	TTTAAA	1 cut(s)	1447
Eam1104I	CTCTTC	6 cut(s)	225, 584, 866, 965, 997, 1459
EarI	CTCTTC	6 cut(s)	225, 584, 866, 965, 997, 1459
EciI	GGCGGA	1 cut(s)	475
Ecl136II	GAGCTC	2 cut(s)	397, 859
Eco130I	CCWWGG	2 cut(s)	1866, 1907
Eco147I	AGGCCT	1 cut(s)	2002
Eco24I	GRGCYC	2 cut(s)	399, 861
Eco47I	GGWCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
Eco53kI	GAGCTC	2 cut(s)	397, 859
EcoICRI	GAGCTC	2 cut(s)	397, 859
EcoO109I	RGGNCCY	2 cut(s)	368, 1283
EcoRII	CCWGG	2 cut(s)	946, 1217
EcoT14I	CCWWGG	2 cut(s)	1866, 1907
EcoT22I	ATGCAT	2 cut(s)	1811, 2127
EcoT38I	GRGCYC	2 cut(s)	399, 861
ErhI	CCWWGG	2 cut(s)	1866, 1907
Esp3I	CGTCTC	1 cut(s)	1776
FaqI	GGGAC	3 cut(s)	25, 1656, 1948
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	4 cut(s)	563, 1507, 1543, 1595
FbaI	TGATCA	1 cut(s)	1671
FblI	GTMKAC	1 cut(s)	1493
Fnu4HI	GCNGC	6 cut(s)	161, 489, 1130, 1272, 1821, 1836
FokI	GGATG	2 cut(s)	872, 1125
FriOI	GRGCYC	2 cut(s)	399, 861
Fsp4HI	GCNGC	6 cut(s)	161, 489, 1130, 1272, 1821, 1836
FspBI	CTAG	8 cut(s)	545, 639, 791, 1046, 1116, 1472, 1830, 2058
GlaI	GCGC	2 cut(s)	207, 845
GluI	GCNGC	6 cut(s)	161, 489, 1130, 1272, 1821, 1836
GsuI	CTGGAG	1 cut(s)	1508
HaeIII	GGCC	5 cut(s)	182, 624, 1403, 1668, 2002
HapII	CCGG	4 cut(s)	183, 587, 1034, 1070
HgaI	GACGC	1 cut(s)	1084
HhaI	GCGC	2 cut(s)	208, 846
Hin6I	GCGC	2 cut(s)	206, 844
HinP1I	GCGC	2 cut(s)	206, 844
HindIII	AAGCTT	2 cut(s)	1223, 1415
HinfI	GANTC	9 cut(s)	5, 51, 168, 984, 1026, 1040, 1480, 2017, 2132
HpaII	CCGG	4 cut(s)	183, 587, 1034, 1070
HphI	GGTGA	9 cut(s)	24, 373, 391, 619, 1049, 1214, 1348, 1711, 1893
Hpy166II	GTNNAC	4 cut(s)	1398, 1494, 1987, 2063
Hpy188III	TCNNGA	8 cut(s)	127, 804, 1046, 1379, 1525, 1690, 1705, 2011
Hpy8I	GTNNAC	4 cut(s)	1398, 1494, 1987, 2063
Hpy99I	CGWCG	1 cut(s)	1246
HpyAV	CCTTC	8 cut(s)	41, 412, 1199, 1257, 1274, 1414, 1696, 1961
HpyCH4III	ACNGT	4 cut(s)	332, 1150, 1163, 1962
HpyCH4IV	ACGT	2 cut(s)	446, 1009
HpyF10VI	GCNNNNNNNGC	8 cut(s)	157, 796, 843, 933, 1135, 1826, 1835, 1885
HpyF3I	CTNAG	3 cut(s)	177, 1313, 1586
HpySE526I	ACGT	2 cut(s)	446, 1009
HspAI	GCGC	2 cut(s)	206, 844
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	1671
LguI	GCTCTTC	2 cut(s)	866, 997
LmnI	GCTCC	4 cut(s)	203, 605, 948, 1171
Lsp1109I	GCAGC	4 cut(s)	147, 1116, 1258, 1847
LweI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
MaeI	CTAG	8 cut(s)	545, 639, 791, 1046, 1116, 1472, 1830, 2058
MaeII	ACGT	2 cut(s)	446, 1009
MaeIII	GTNAC	9 cut(s)	557, 704, 724, 974, 1150, 1163, 1426, 1546, 1717
MhlI	GDGCHC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
MluCI	AATT	5 cut(s)	429, 521, 735, 1374, 1533
MmeI	TCCRAC	2 cut(s)	1112, 1193
Mph1103I	ATGCAT	2 cut(s)	1811, 2127
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	1950
MseI	TTAA	6 cut(s)	465, 1197, 1433, 1446, 1791, 1874
MslI	CAYNNNNRTG	6 cut(s)	254, 359, 674, 918, 1109, 1982
MspI	CCGG	4 cut(s)	183, 587, 1034, 1070
MspR9I	CCNGG	4 cut(s)	948, 1035, 1071, 1219
MvaI	CCWGG	2 cut(s)	948, 1219
MvnI	CGCG	1 cut(s)	1380
MwoI	GCNNNNNNNGC	8 cut(s)	157, 796, 843, 933, 1135, 1826, 1835, 1885
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	2 cut(s)	1035, 1071
NdeI	CATATG	4 cut(s)	563, 1507, 1543, 1595
NgoMIV	GCCGGC	1 cut(s)	182
NheI	GCTAGC	2 cut(s)	638, 790
NlaIV	GGNNCC	3 cut(s)	601, 1173, 1644
NmuCI	GTSAC	3 cut(s)	724, 1426, 1717
NruI	TCGCGA	1 cut(s)	1380
NsiI	ATGCAT	2 cut(s)	1811, 2127
NspI	RCATGY	1 cut(s)	1813
OliI	CACNNNNGTG	1 cut(s)	1982
PagI	TCATGA	2 cut(s)	126, 1689
PceI	AGGCCT	1 cut(s)	2002
PciSI	GCTCTTC	2 cut(s)	866, 997
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	1950
PfeI	GAWTC	9 cut(s)	5, 51, 168, 984, 1026, 1040, 1480, 2017, 2132
PkrI	GCNGC	6 cut(s)	162, 490, 1131, 1273, 1822, 1837
Ple19I	CGATCG	1 cut(s)	1743
Ppu21I	YACGTR	1 cut(s)	447
PpuMI	RGGWCCY	2 cut(s)	368, 1283
PsiI	TTATAA	2 cut(s)	303, 1926
Psp124BI	GAGCTC	2 cut(s)	399, 861
Psp5II	RGGWCCY	2 cut(s)	368, 1283
Psp6I	CCWGG	2 cut(s)	946, 1217
PspGI	CCWGG	2 cut(s)	946, 1217
PspN4I	GGNNCC	3 cut(s)	601, 1173, 1644
PspPI	GGNCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
PspPPI	RGGWCCY	2 cut(s)	368, 1283
PvuI	CGATCG	1 cut(s)	1743
RruI	TCGCGA	1 cut(s)	1380
RsaI	GTAC	4 cut(s)	63, 193, 449, 650
RsaNI	GTAC	4 cut(s)	62, 192, 448, 649
RseI	CAYNNNNRTG	6 cut(s)	254, 359, 674, 918, 1109, 1982
SacI	GAGCTC	2 cut(s)	399, 861
SapI	GCTCTTC	2 cut(s)	866, 997
SaqAI	TTAA	6 cut(s)	465, 1197, 1433, 1446, 1791, 1874
SatI	GCNGC	6 cut(s)	161, 489, 1130, 1272, 1821, 1836
Sau96I	GGNCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
ScrFI	CCNGG	4 cut(s)	948, 1035, 1071, 1219
SduI	GDGCHC	6 cut(s)	399, 684, 861, 1009, 1261, 1989
SfaNI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
SinI	GGWCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
SmiMI	CAYNNNNRTG	6 cut(s)	254, 359, 674, 918, 1109, 1982
SmlI	CTYRAG	2 cut(s)	187, 2009
SmoI	CTYRAG	2 cut(s)	187, 2009
Sse9I	AATT	5 cut(s)	429, 521, 735, 1374, 1533
SseBI	AGGCCT	1 cut(s)	2002
SsiI	CCGC	4 cut(s)	486, 489, 782, 1820
SspMI	CTAG	8 cut(s)	545, 639, 791, 1046, 1116, 1472, 1830, 2058
SstI	GAGCTC	2 cut(s)	399, 861
StuI	AGGCCT	1 cut(s)	2002
StyD4I	CCNGG	4 cut(s)	946, 1033, 1069, 1217
StyI	CCWWGG	2 cut(s)	1866, 1907
TaaI	ACNGT	4 cut(s)	332, 1150, 1163, 1962
TaiI	ACGT	2 cut(s)	449, 1012
TaqI	TCGA	4 cut(s)	166, 309, 605, 1743
TaqII	GACCGA	1 cut(s)	2080
TasI	AATT	5 cut(s)	429, 521, 735, 1374, 1533
TauI	GCSGC	2 cut(s)	491, 1823
TfiI	GAWTC	9 cut(s)	5, 51, 168, 984, 1026, 1040, 1480, 2017, 2132
Tru1I	TTAA	6 cut(s)	465, 1197, 1433, 1446, 1791, 1874
Tru9I	TTAA	6 cut(s)	465, 1197, 1433, 1446, 1791, 1874
TscAI	CASTG	4 cut(s)	1153, 1192, 1354, 1658
TseFI	GTSAC	3 cut(s)	724, 1426, 1717
TseI	GCWGC	4 cut(s)	160, 1129, 1271, 1835
Tsp45I	GTSAC	3 cut(s)	724, 1426, 1717
TspGWI	ACGGA	2 cut(s)	27, 79
TspRI	CASTG	4 cut(s)	1153, 1192, 1354, 1658
VneI	GTGCAC	1 cut(s)	1985
VpaK11BI	GGWCC	7 cut(s)	368, 1215, 1283, 1292, 1459, 1643, 2063
XapI	RAATTY	1 cut(s)	735
XbaI	TCTAGA	1 cut(s)	1045
XceI	RCATGY	1 cut(s)	1813
XmiI	GTMKAC	1 cut(s)	1493
XmnI	GAANNNNTTC	1 cut(s)	1950
XspI	CTAG	8 cut(s)	545, 639, 791, 1046, 1116, 1472, 1830, 2058
Zsp2I	ATGCAT	2 cut(s)	1811, 2127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.