Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

51338169 .. 51341644

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGATTCAAATGTGGTGGTCAGAAGCTCATCACCTCTGTCCCATGAAGGAATCAGAATGGTACGGACAGCTATAAGGCTGTTCTTAGTGTTGGTGGTGTTTGGAGGGTGTGTTTTGATCTATGTCATGATGCCCACAAACACATATAGGAAAATATGGCTGCCTCGAATCCGAGCTGAGGCCGGCTCAAGTACCTATTTTGGAGCGCAAGGTTCAACTCTTCTGTTTTACACATTTCCCATTATGTTCATTGCTGTGATGGGTTGTGTGTATCTCCATCTGGGAAAGAAGATTACTGATTATAAAATGGAAAGTGATGGCAAAACGAACAGTATAGCTGTGTGGAAACAGCCCATGCTGGTGAAAGGTCCTTTAGGCATTGTTTCTGGGATAGAGCTCACCTTCTTCATCATGTTCATTGCACTCCTAATTTGGTCTATCTCCACGTACTTGACCAACGGTTTTAAGATAATCACACCACAATCCGCCGCAAAGAGCCATGAAAAAGTATGGGAAGCTAAATTGGAGAGTGCATCATTGAGGCTAGGGGTTGTGGGTAACATATGCCTTGCACTTCTCTTCTTTCCGGTCGCTCGTGGCTCCTCGATCTTGCCTCTGTTTGGCCTCACCTCCGAGGCTAGCATCAAGTACCATATATGGGTAGGAAACATACTAATGGTGCTCTTTACAGCTCATGGAACTTGTTACATCATATATTGGGCTGTCACAGATCAAATTTCCCAGATGATAAAATGGGAGAAAACTGGCATATCAAACATAGCGGGAGAGCTAGCTTTGCTCTCTGGACTTGCCCTGTGGGTGGCTACAATCCCTCGCATTAGGCGCAAAATGTTTGAGCTCTTCTTCTACACACACTACCTTTACATCCCGTTCATGGTCTTCTTCATCTTTCATGTCGGTGTCGGCTATGCTGGCATTATGCTCCCTGGCTTCTTCCTCTTCATGGTTGATCGTTACCTACGATTCTTGCAATCCGAGAGAAGAGCACGTTTAGTCTCTGCCCGAATCTTGCCGGGTGAATCTCTAGAACTCAACTTTGCCAAAAGTCCGGGTTTGAAATACAATCCAACAAGCGTCATGTTCATAAATGTGCCTAGTATTTCCAAGCTGCAATGGCATCCTTACACTGTTACTTCAAACAGTAACTTGGAGCCAGAGAAGATCAGTGTCGTCATTAAAGGTGAAGGAAGTTGGACCAGGAAGCTTTACCAAGTCCTTTCGTCGCCTTCTACAAGTGCTCGGATTGAGGCTGCTGTTGAAGGACCTTATGGACCTGATGCAACTCATTTTCTAAGGTTAGTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

442

Amino Acids

49.72

Weight (kDa)

9.71

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	182 - 302	1.3e-20	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	336 - 433	1.9e-23	FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AciI	CCGC	3 cut(s)	486, 489, 782
AcsI	RAATTY	1 cut(s)	735
AfaI	GTAC	4 cut(s)	63, 193, 449, 650
AfiI	CCNNNNNNNGG	6 cut(s)	178, 620, 658, 820, 895, 964
AgsI	TTSAA	5 cut(s)	9, 216, 1078, 1158, 1280
AjnI	CCWGG	2 cut(s)	946, 1217
Alw21I	GWGCWC	5 cut(s)	399, 684, 861, 1009, 1261
Alw26I	GTCTC	1 cut(s)	1021
AoxI	GGCC	2 cut(s)	180, 622
ApeKI	GCWGC	3 cut(s)	160, 1129, 1271
ApoI	RAATTY	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	208, 846
AspS9I	GGNCC	4 cut(s)	368, 1215, 1283, 1292
AsuC2I	CCSGG	2 cut(s)	1035, 1071
AsuHPI	GGTGA	6 cut(s)	24, 373, 391, 619, 1049, 1214
AsuNHI	GCTAGC	2 cut(s)	638, 790
AvaII	GGWCC	4 cut(s)	368, 1215, 1283, 1292
BanII	GRGCYC	2 cut(s)	399, 861
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	892
Bbv12I	GWGCWC	5 cut(s)	399, 684, 861, 1009, 1261
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	147, 1116, 1258
BccI	CCATC	3 cut(s)	253, 285, 311
BciT130I	CCWGG	2 cut(s)	948, 1219
BcnI	CCSGG	2 cut(s)	1035, 1071
BcoDI	GTCTC	1 cut(s)	1021
BfaI	CTAG	5 cut(s)	545, 639, 791, 1046, 1116
BisI	GCNGC	4 cut(s)	161, 489, 1130, 1272
BlsI	GCNGC	4 cut(s)	162, 490, 1131, 1273
Bme1390I	CCNGG	4 cut(s)	948, 1035, 1071, 1219
Bme18I	GGWCC	4 cut(s)	368, 1215, 1283, 1292
BmgT120I	GGNCC	4 cut(s)	368, 1215, 1283, 1292
BmiI	GGNNCC	2 cut(s)	601, 1173
BmrFI	CCNGG	4 cut(s)	948, 1035, 1071, 1219
BmsI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
BmtI	GCTAGC	2 cut(s)	642, 794
BpiI	GAAGAC	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	2 cut(s)	1035, 1071
BsaAI	YACGTR	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	633, 946
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 620, 658, 820, 895, 964
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	3 cut(s)	249, 417, 1139
BseBI	CCWGG	2 cut(s)	948, 1219
BseDI	CCNNGG	2 cut(s)	633, 946
BseGI	GGATG	2 cut(s)	885, 1138
BseLI	CCNNNNNNNGG	6 cut(s)	178, 620, 658, 820, 895, 964
BseMI	GCAATG	3 cut(s)	249, 417, 1139
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	147, 1116, 1258
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	182, 624
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	5 cut(s)	399, 684, 861, 1009, 1261
BsiSI	CCGG	4 cut(s)	183, 587, 1034, 1070
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	6 cut(s)	178, 620, 658, 820, 895, 964
BsmAI	GTCTC	1 cut(s)	1021
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	182, 624
Bsp1286I	GDGCHC	5 cut(s)	399, 684, 861, 1009, 1261
Bsp143I	GATC	5 cut(s)	117, 606, 730, 970, 1182
BspACI	CCGC	3 cut(s)	486, 489, 782
BspANI	GGCC	2 cut(s)	182, 624
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	601, 1173
BspOI	GCTAGC	2 cut(s)	642, 794
BspQI	GCTCTTC	2 cut(s)	866, 997
BsrDI	GCAATG	3 cut(s)	249, 417, 1139
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	633, 946
BssMI	GATC	5 cut(s)	117, 606, 730, 970, 1182
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	948, 1219
Bst4CI	ACNGT	4 cut(s)	332, 461, 1150, 1163
Bst6I	CTCTTC	5 cut(s)	225, 584, 866, 965, 997
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	4 cut(s)	184, 640, 792, 934
BstDEI	CTNAG	3 cut(s)	85, 177, 1313
BstF5I	GGATG	2 cut(s)	885, 1138
BstHHI	GCGC	2 cut(s)	208, 846
BstKTI	GATC	5 cut(s)	120, 609, 733, 973, 1185
BstMAI	GTCTC	1 cut(s)	1021
BstMBI	GATC	5 cut(s)	117, 606, 730, 970, 1182
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	4 cut(s)	796, 843, 933, 1135
BstNI	CCWGG	2 cut(s)	948, 1219
BstSCI	CCNGG	4 cut(s)	946, 1033, 1069, 1217
BstV1I	GCAGC	3 cut(s)	147, 1116, 1258
BstV2I	GAAGAC	1 cut(s)	892
BsuRI	GGCC	2 cut(s)	182, 624
BtsCI	GGATG	2 cut(s)	885, 1138
BtsIMutI	CAGTG	2 cut(s)	1146, 1192
Cac8I	GCNNGC	4 cut(s)	184, 640, 792, 934
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	2 cut(s)	208, 846
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	4 cut(s)	368, 1215, 1283, 1292
CseI	GACGC	1 cut(s)	1084
Csp6I	GTAC	4 cut(s)	62, 192, 448, 649
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviQI	GTAC	4 cut(s)	62, 192, 448, 649
DdeI	CTNAG	3 cut(s)	85, 177, 1313
DpnI	GATC	5 cut(s)	119, 608, 732, 972, 1184
DpnII	GATC	5 cut(s)	117, 606, 730, 970, 1182
Eam1104I	CTCTTC	5 cut(s)	225, 584, 866, 965, 997
EarI	CTCTTC	5 cut(s)	225, 584, 866, 965, 997
EciI	GGCGGA	1 cut(s)	475
Ecl136II	GAGCTC	2 cut(s)	397, 859
Eco24I	GRGCYC	2 cut(s)	399, 861
Eco47I	GGWCC	4 cut(s)	368, 1215, 1283, 1292
Eco53kI	GAGCTC	2 cut(s)	397, 859
EcoICRI	GAGCTC	2 cut(s)	397, 859
EcoO109I	RGGNCCY	2 cut(s)	368, 1283
EcoRII	CCWGG	2 cut(s)	946, 1217
EcoT38I	GRGCYC	2 cut(s)	399, 861
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	563
Fnu4HI	GCNGC	4 cut(s)	161, 489, 1130, 1272
FokI	GGATG	2 cut(s)	872, 1125
FriOI	GRGCYC	2 cut(s)	399, 861
Fsp4HI	GCNGC	4 cut(s)	161, 489, 1130, 1272
FspBI	CTAG	5 cut(s)	545, 639, 791, 1046, 1116
GlaI	GCGC	2 cut(s)	207, 845
GluI	GCNGC	4 cut(s)	161, 489, 1130, 1272
HaeIII	GGCC	2 cut(s)	182, 624
HapII	CCGG	4 cut(s)	183, 587, 1034, 1070
HgaI	GACGC	1 cut(s)	1084
HhaI	GCGC	2 cut(s)	208, 846
Hin6I	GCGC	2 cut(s)	206, 844
HinP1I	GCGC	2 cut(s)	206, 844
HindIII	AAGCTT	1 cut(s)	1223
HinfI	GANTC	6 cut(s)	5, 51, 168, 984, 1026, 1040
HpaII	CCGG	4 cut(s)	183, 587, 1034, 1070
HphI	GGTGA	6 cut(s)	24, 373, 391, 619, 1049, 1214
Hpy188I	TCNGA	6 cut(s)	23, 56, 173, 634, 997, 1263
Hpy188III	TCNNGA	3 cut(s)	127, 804, 1046
Hpy99I	CGWCG	1 cut(s)	1246
HpyAV	CCTTC	5 cut(s)	41, 412, 1199, 1257, 1274
HpyCH4III	ACNGT	4 cut(s)	332, 461, 1150, 1163
HpyCH4IV	ACGT	2 cut(s)	446, 1009
HpyCH4V	TGCA	6 cut(s)	422, 533, 572, 991, 1132, 1301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	796, 843, 933, 1135
HpyF3I	CTNAG	3 cut(s)	85, 177, 1313
HpySE526I	ACGT	2 cut(s)	446, 1009
HspAI	GCGC	2 cut(s)	206, 844
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	117, 606, 730, 970, 1182
LguI	GCTCTTC	2 cut(s)	866, 997
LmnI	GCTCC	4 cut(s)	203, 605, 948, 1171
Lsp1109I	GCAGC	3 cut(s)	147, 1116, 1258
LweI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
MaeI	CTAG	5 cut(s)	545, 639, 791, 1046, 1116
MaeII	ACGT	2 cut(s)	446, 1009
MaeIII	GTNAC	6 cut(s)	557, 704, 724, 974, 1150, 1163
MalI	GATC	5 cut(s)	119, 608, 732, 972, 1184
MboI	GATC	5 cut(s)	117, 606, 730, 970, 1182
MhlI	GDGCHC	5 cut(s)	399, 684, 861, 1009, 1261
MluCI	AATT	3 cut(s)	429, 521, 735
MmeI	TCCRAC	2 cut(s)	1112, 1193
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	2 cut(s)	465, 1197
MslI	CAYNNNNRTG	5 cut(s)	254, 359, 674, 918, 1109
MspI	CCGG	4 cut(s)	183, 587, 1034, 1070
MspR9I	CCNGG	4 cut(s)	948, 1035, 1071, 1219
MvaI	CCWGG	2 cut(s)	948, 1219
MwoI	GCNNNNNNNGC	4 cut(s)	796, 843, 933, 1135
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	2 cut(s)	1035, 1071
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	5 cut(s)	117, 606, 730, 970, 1182
NgoMIV	GCCGGC	1 cut(s)	182
NheI	GCTAGC	2 cut(s)	638, 790
NlaIV	GGNNCC	2 cut(s)	601, 1173
NmuCI	GTSAC	1 cut(s)	724
PagI	TCATGA	1 cut(s)	126
PciSI	GCTCTTC	2 cut(s)	866, 997
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	6 cut(s)	5, 51, 168, 984, 1026, 1040
PkrI	GCNGC	4 cut(s)	162, 490, 1131, 1273
Ppu21I	YACGTR	1 cut(s)	447
PpuMI	RGGWCCY	2 cut(s)	368, 1283
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	399, 861
Psp5II	RGGWCCY	2 cut(s)	368, 1283
Psp6I	CCWGG	2 cut(s)	946, 1217
PspGI	CCWGG	2 cut(s)	946, 1217
PspN4I	GGNNCC	2 cut(s)	601, 1173
PspPI	GGNCC	4 cut(s)	368, 1215, 1283, 1292
PspPPI	RGGWCCY	2 cut(s)	368, 1283
RsaI	GTAC	4 cut(s)	63, 193, 449, 650
RsaNI	GTAC	4 cut(s)	62, 192, 448, 649
RseI	CAYNNNNRTG	5 cut(s)	254, 359, 674, 918, 1109
SacI	GAGCTC	2 cut(s)	399, 861
SapI	GCTCTTC	2 cut(s)	866, 997
SaqAI	TTAA	2 cut(s)	465, 1197
SatI	GCNGC	4 cut(s)	161, 489, 1130, 1272
Sau3AI	GATC	5 cut(s)	117, 606, 730, 970, 1182
Sau96I	GGNCC	4 cut(s)	368, 1215, 1283, 1292
ScrFI	CCNGG	4 cut(s)	948, 1035, 1071, 1219
SduI	GDGCHC	5 cut(s)	399, 684, 861, 1009, 1261
SfaNI	GCATC	5 cut(s)	120, 542, 651, 1147, 1288
SinI	GGWCC	4 cut(s)	368, 1215, 1283, 1292
SmiMI	CAYNNNNRTG	5 cut(s)	254, 359, 674, 918, 1109
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	429, 521, 735
SsiI	CCGC	3 cut(s)	486, 489, 782
SspMI	CTAG	5 cut(s)	545, 639, 791, 1046, 1116
SstI	GAGCTC	2 cut(s)	399, 861
StyD4I	CCNGG	4 cut(s)	946, 1033, 1069, 1217
TaaI	ACNGT	4 cut(s)	332, 461, 1150, 1163
TaiI	ACGT	2 cut(s)	449, 1012
TaqI	TCGA	2 cut(s)	166, 605
TasI	AATT	3 cut(s)	429, 521, 735
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	6 cut(s)	5, 51, 168, 984, 1026, 1040
Tru1I	TTAA	2 cut(s)	465, 1197
Tru9I	TTAA	2 cut(s)	465, 1197
TscAI	CASTG	2 cut(s)	1153, 1192
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	3 cut(s)	160, 1129, 1271
Tsp45I	GTSAC	1 cut(s)	724
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	1153, 1192
VpaK11BI	GGWCC	4 cut(s)	368, 1215, 1283, 1292
XapI	RAATTY	1 cut(s)	735
XbaI	TCTAGA	1 cut(s)	1045
XspI	CTAG	5 cut(s)	545, 639, 791, 1046, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.