pycom01g21780

Ferric reduction oxidase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000738
Physical Location & Seq
Reverse (-)
19659829 .. 19660041
213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g21780.1

Sequence Viewer

Length: 213 bp
ATGTTGAATGGAACAAGAAAGGCGTTTTGCAAGATCTTTGAGCTCTTCTTATACACTCATCATCTGTACATTGTCTTCCTTGTCTTCATCGTGTTTCACGTGGGTTTCTCCTACGCTTGCATAATGCTGCCGGGCTTTTACCGCTTCCTGATTGATAGGTTCTTGCGTTCTTGCAATGTCAGCGTAGAATTCGCATGGTTTCAGCCCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

71

Amino Acids

8.42

Weight (kDa)

8.99

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 188
AcvI CACGTG 1 cut(s) 100
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbrPI CACGTG 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 67, 76
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 114
BcnI CCSGG 1 cut(s) 132
BglII AGATCT 1 cut(s) 33
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 2 cut(s) 67, 76
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 66
BssMI GATC 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 118
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 141, 180
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 2 cut(s) 67, 76
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 195
CviJI RGCY 3 cut(s) 43, 135, 205
CviKI_1 RGCY 3 cut(s) 43, 135, 205
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
Eco72I CACGTG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 198
FaiI YATR 3 cut(s) 52, 122, 196
FatI CATG 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 198
HpaII CCGG 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 30, 120, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 180
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 144, 161
Lsp1109I GCAGC 1 cut(s) 114
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 37, 67, 76
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 188
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 141, 180
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PkrI GCNGC 1 cut(s) 129
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 45
PspCI CACGTG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 50
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 45, 102, 161
Sse9I AATT 1 cut(s) 188
SsiI CCGC 1 cut(s) 142
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 66
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 76
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.