Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Forward (+)

36089566 .. 36092315

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGGGTTTCTCTATCTCCTCCTCACCCTCACACTTTCGTCAGTCTTCCTCTTCCTAGCCTTCGTCTCGTTTCTCATACTCAAACTCTACACAGGCAAGTCCATCAAAGACCCAAACTACCCCCCTGTAAAGGGCACCGTCTTCCACCAGCTCTTATATTTCAACAAACTCTACGACCACGAAGCCAAAGTCGCCAGAGAAAACCCTACTTACAGGCTACTGGCGGCGGACCACAGCGCCATATATACGTGTGACCCAAGAAACATTGAGCACATGCTCAAAACCAGATTTGCTCACTACACGAAAGGGGAGTATAACCAGACTATTGTGAGAGATGTTTTTGGGCATGGGATTTTTGCTGTGGATGGAGATAAGTGGAGGCAGCAGAGGAAGCTTGCGAGTTTTGAGTTTTCAACCAGGGTTTTGAGGGATTTTAGCTGTTCTGTTTTTAGGAGAAGTGCTGCCAAAATTGTCAGAAAGGTTTCGGAGTTTTCCGAGTCCAGTGAGGTTTTTGATATGCAGGATTTGCTTATGAGATGCACCTTAGATTCCATATTCAAAGTTGGATTTGGTATAGAACTGAGTTGCATGGAGGGTTCAAGCAAAGAAGGGCTAGCATTCATGAAGGCATTTGATGAGTCAACTGCTCTGACCTACTGGCGCTATGTTGATCCATTCTGGAAATTGAAAAGAATTCTTAACATTGGTTCTGAAGCCACCCTTAAAAATTATGTCAAAGTCATTCATGACTTTGTGCACCAACTTATCAGGAGAAAGAGGACATTACTAGGTAGCCAGAAAGATAGTAATGACAGGCAGGACATACTATCACGATTTCTATTGGAGAGCGAGAAGAATCCAGAGGAGATGAATGATAAATATCTAAGTGACATAATTCTGAATTTTATGATTGCTGGGAAAGATACCAGTGCAAATACACTCTCATGGTTCTTCTACATGCTCAGCAAGAATCCTCTAATACAGGAAAAAGTTGCACAAGAAGTGAGGGATGTCGTTGGTCTGAATCATGAAGCCAACATTGATGAATTTGTGGCCAATATAACCGATGCAGCTCTTGAAAAAATGCACTATCTTCATGCGGCATTAACAGAGACCTTGAGGCTATACCCAGCAGTTCCTATTGATGGGAGACATGCAGAGGTAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGATTCAATTAACTACATGAGTTATGCCATGGGCAGAATGCTTTATATTTGGGGAAAGGATGCAGAGGAGTATAGACCTGAAAGATGGCTCAACAATGGAATTTTCCAGCCTGAATCACCTTTCAAATTCGTCGCATTTCATGCTGGTCCTCGGATCTGTCTGGGGAAGGACTTTGCTTATCGGCAGATGAAGATAGTAGCAATGGCACTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAAAAAATGTGACCTATAGGACCATGTTCACCCTTCACATTGATGGAAGTCTTCCTTTGGTTGCACTTCCAAGGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

509

Amino Acids

58.97

Weight (kDa)

8.82

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	51 - 494	2.6e-77	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	4 cut(s)	224, 227, 1100, 1426
AclWI	GGATC	2 cut(s)	665, 1364
AcoI	YGGCCR	1 cut(s)	1053
AcsI	RAATTY	5 cut(s)	693, 901, 1046, 1302, 1328
AcuI	CTGAAG	1 cut(s)	732
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 1145
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	9 cut(s)	163, 414, 559, 600, 688, 1079, 1209, 1327, 1432
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	151, 394, 438, 1073
AluI	AGCT	4 cut(s)	151, 394, 438, 1073
Alw21I	GWGCWC	2 cut(s)	273, 759
Alw26I	GTCTC	3 cut(s)	70, 1106, 1144
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	2 cut(s)	665, 1364
AoxI	GGCC	1 cut(s)	1053
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	382, 461, 1070
ApoI	RAATTY	5 cut(s)	693, 901, 1046, 1302, 1328
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	239, 663
AspS9I	GGNCC	3 cut(s)	229, 1349, 1467
AsuHPI	GGTGA	3 cut(s)	16, 1311, 1468
AsuNHI	GCTAGC	1 cut(s)	613
AvaII	GGWCC	3 cut(s)	229, 1349, 1467
BaeGI	GKGCMC	2 cut(s)	137, 759
BalI	TGGCCA	1 cut(s)	1055
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	3 cut(s)	37, 133, 1490
Bbv12I	GWGCWC	2 cut(s)	273, 759
BbvI	GCAGC	3 cut(s)	394, 448, 1082
BccI	CCATC	6 cut(s)	110, 359, 1139, 1175, 1281, 1484
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	70, 1106, 1144
BfaI	CTAG	3 cut(s)	56, 614, 788
BfmI	CTRYAG	1 cut(s)	1462
BfoI	RGCGCY	2 cut(s)	240, 664
BisI	GCNGC	5 cut(s)	225, 383, 462, 1071, 1101
BlpI	GCTNAGC	1 cut(s)	962
BlsI	GCNGC	5 cut(s)	226, 384, 463, 1072, 1102
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	3 cut(s)	229, 1349, 1467
BmgT120I	GGNCC	3 cut(s)	229, 1349, 1467
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	3 cut(s)	527, 1057, 1252
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	3 cut(s)	37, 133, 1490
Bpu1102I	GCTNAGC	1 cut(s)	962
BpuEI	CTTGAG	1 cut(s)	1138
BsaAI	YACGTR	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	4 cut(s)	417, 1230, 1352, 1517
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 1145
Bse1I	ACTGG	4 cut(s)	225, 501, 662, 927
Bse3DI	GCAATG	1 cut(s)	1410
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	4 cut(s)	417, 1230, 1352, 1517
BseGI	GGATG	3 cut(s)	370, 1015, 1267
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 1145
BseMI	GCAATG	1 cut(s)	1410
BseMII	CTCAG	2 cut(s)	572, 976
BseNI	ACTGG	4 cut(s)	225, 501, 662, 927
BseRI	GAGGAG	4 cut(s)	8, 11, 878, 1283
BseSI	GKGCMC	2 cut(s)	137, 759
BseXI	GCAGC	3 cut(s)	394, 448, 1082
BseYI	CCCAGC	2 cut(s)	914, 1129
BshFI	GGCC	1 cut(s)	1055
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	273, 759
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 1145
BsmAI	GTCTC	3 cut(s)	70, 1106, 1144
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	617, 1245
BsnI	GGCC	1 cut(s)	1055
Bso31I	GGTCTC	1 cut(s)	1106
Bsp1286I	GDGCHC	3 cut(s)	137, 273, 759
Bsp143I	GATC	2 cut(s)	670, 1356
Bsp1720I	GCTNAGC	1 cut(s)	962
Bsp19I	CCATGG	1 cut(s)	1230
BspACI	CCGC	4 cut(s)	224, 227, 1100, 1426
BspANI	GGCC	1 cut(s)	1055
BspCNI	CTCAG	2 cut(s)	573, 975
BspHI	TCATGA	3 cut(s)	621, 745, 1027
BspLI	GGNNCC	1 cut(s)	136
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	2 cut(s)	665, 1364
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	1 cut(s)	1410
BsrI	ACTGG	4 cut(s)	225, 501, 662, 927
BssECI	CCNNGG	4 cut(s)	417, 1230, 1352, 1517
BssMI	GATC	2 cut(s)	670, 1356
BssT1I	CCWWGG	2 cut(s)	1230, 1517
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	526, 1343
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	396, 615
BstDEI	CTNAG	4 cut(s)	544, 581, 884, 962
BstDSI	CCRYGG	1 cut(s)	1230
BstF5I	GGATG	3 cut(s)	370, 1015, 1267
BstH2I	RGCGCY	2 cut(s)	240, 664
BstHHI	GCGC	2 cut(s)	239, 663
BstKTI	GATC	2 cut(s)	673, 1359
BstMAI	GTCTC	3 cut(s)	70, 1106, 1144
BstMBI	GATC	2 cut(s)	670, 1356
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 391, 526, 1343, 1425
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	3 cut(s)	277, 961, 1157
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	1462
BstSLI	GKGCMC	2 cut(s)	137, 759
BstV1I	GCAGC	3 cut(s)	394, 448, 1082
BstV2I	GAAGAC	3 cut(s)	37, 133, 1490
BstX2I	RGATCY	1 cut(s)	1356
BstYI	RGATCY	1 cut(s)	1356
BsuRI	GGCC	1 cut(s)	1055
BtgI	CCRYGG	1 cut(s)	1230
BtsCI	GGATG	3 cut(s)	370, 1015, 1267
BtsIMutI	CAGTG	2 cut(s)	508, 934
Cac8I	GCNNGC	2 cut(s)	396, 615
CciI	TCATGA	3 cut(s)	621, 745, 1027
CfoI	GCGC	2 cut(s)	239, 663
Cfr13I	GGNCC	3 cut(s)	229, 1349, 1467
DdeI	CTNAG	4 cut(s)	544, 581, 884, 962
DpnI	GATC	2 cut(s)	672, 1358
DpnII	GATC	2 cut(s)	670, 1356
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	1230, 1517
Eco31I	GGTCTC	1 cut(s)	1106
Eco47I	GGWCC	3 cut(s)	229, 1349, 1467
Eco57I	CTGAAG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	1230, 1517
ErhI	CCWWGG	2 cut(s)	1230, 1517
Esp3I	CGTCTC	1 cut(s)	70
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 1486, 1518
Fnu4HI	GCNGC	5 cut(s)	225, 383, 462, 1071, 1101
FokI	GGATG	3 cut(s)	377, 1022, 1274
Fsp4HI	GCNGC	5 cut(s)	225, 383, 462, 1071, 1101
FspBI	CTAG	3 cut(s)	56, 614, 788
GlaI	GCGC	2 cut(s)	238, 662
GluI	GCNGC	5 cut(s)	225, 383, 462, 1071, 1101
GsaI	CCCAGC	2 cut(s)	918, 1133
HaeII	RGCGCY	2 cut(s)	240, 664
HaeIII	GGCC	1 cut(s)	1055
HhaI	GCGC	2 cut(s)	239, 663
Hin6I	GCGC	2 cut(s)	237, 661
HinP1I	GCGC	2 cut(s)	237, 661
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	8 cut(s)	497, 548, 638, 856, 970, 1024, 1205, 1316
HphI	GGTGA	3 cut(s)	16, 1311, 1468
Hpy166II	GTNNAC	3 cut(s)	642, 757, 1476
Hpy188I	TCNGA	8 cut(s)	476, 487, 496, 651, 712, 900, 1023, 1356
Hpy188III	TCNNGA	9 cut(s)	622, 679, 746, 769, 831, 860, 1028, 1076, 1178
Hpy8I	GTNNAC	3 cut(s)	642, 757, 1476
Hpy99I	CGWCG	1 cut(s)	1337
HpyAV	CCTTC	5 cut(s)	70, 602, 619, 1363, 1490
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 391, 526, 1343, 1425
HpyF3I	CTNAG	4 cut(s)	544, 581, 884, 962
HpySE526I	ACGT	1 cut(s)	248
HspAI	GCGC	2 cut(s)	237, 661
Kzo9I	GATC	2 cut(s)	670, 1356
Lsp1109I	GCAGC	3 cut(s)	394, 448, 1082
LweI	GCATC	3 cut(s)	527, 1057, 1252
MaeI	CTAG	3 cut(s)	56, 614, 788
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	251, 887, 1456
MalI	GATC	2 cut(s)	672, 1358
MboI	GATC	2 cut(s)	670, 1356
MflI	RGATCY	1 cut(s)	1356
MhlI	GDGCHC	3 cut(s)	137, 273, 759
MlsI	TGGCCA	1 cut(s)	1055
MluNI	TGGCCA	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	506, 647
MmeI	TCCRAC	1 cut(s)	544
Mox20I	TGGCCA	1 cut(s)	1055
MroXI	GAANNNNTTC	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	4 cut(s)	699, 723, 1106, 1212
MslI	CAYNNNNRTG	2 cut(s)	943, 1488
Msp20I	TGGCCA	1 cut(s)	1055
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	2 cut(s)	617, 1245
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	5 cut(s)	191, 391, 526, 1343, 1425
NcoI	CCATGG	1 cut(s)	1230
NdeII	GATC	2 cut(s)	670, 1356
NheI	GCTAGC	1 cut(s)	613
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	3 cut(s)	251, 887, 1456
NspI	RCATGY	3 cut(s)	277, 961, 1157
PagI	TCATGA	3 cut(s)	621, 745, 1027
PctI	GAATGC	2 cut(s)	617, 1245
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	6 cut(s)	548, 856, 970, 1024, 1205, 1316
PkrI	GCNGC	5 cut(s)	226, 384, 463, 1072, 1102
PleI	GAGTC	2 cut(s)	505, 646
PpsI	GAGTC	2 cut(s)	505, 646
Ppu21I	YACGTR	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	416
PspFI	CCCAGC	2 cut(s)	914, 1129
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	3 cut(s)	229, 1349, 1467
PsuI	RGATCY	1 cut(s)	1356
RseI	CAYNNNNRTG	2 cut(s)	943, 1488
SaqAI	TTAA	4 cut(s)	699, 723, 1106, 1212
SatI	GCNGC	5 cut(s)	225, 383, 462, 1071, 1101
Sau3AI	GATC	2 cut(s)	670, 1356
Sau96I	GGNCC	3 cut(s)	229, 1349, 1467
SchI	GAGTC	2 cut(s)	506, 647
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	3 cut(s)	137, 273, 759
SfaNI	GCATC	3 cut(s)	527, 1057, 1252
SfcI	CTRYAG	1 cut(s)	1462
SinI	GGWCC	3 cut(s)	229, 1349, 1467
SmiMI	CAYNNNNRTG	2 cut(s)	943, 1488
SmlI	CTYRAG	1 cut(s)	1117
SmoI	CTYRAG	1 cut(s)	1117
SsiI	CCGC	4 cut(s)	224, 227, 1100, 1426
SspMI	CTAG	3 cut(s)	56, 614, 788
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	1230, 1517
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	251
TauI	GCSGC	2 cut(s)	227, 1103
TfiI	GAWTC	6 cut(s)	548, 856, 970, 1024, 1205, 1316
Tru1I	TTAA	4 cut(s)	699, 723, 1106, 1212
Tru9I	TTAA	4 cut(s)	699, 723, 1106, 1212
TscAI	CASTG	2 cut(s)	508, 934
TseFI	GTSAC	3 cut(s)	251, 887, 1456
TseI	GCWGC	3 cut(s)	382, 461, 1070
Tsp45I	GTSAC	3 cut(s)	251, 887, 1456
TspRI	CASTG	2 cut(s)	508, 934
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	3 cut(s)	229, 1349, 1467
XapI	RAATTY	5 cut(s)	693, 901, 1046, 1302, 1328
XceI	RCATGY	3 cut(s)	277, 961, 1157
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	3 cut(s)	56, 614, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.