Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

36097312 .. 36098043

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACCTTAAAAAAGAATGGTTTGAAAAGAAAATTCCAAGATGAGCATGATTGGGAGAACAAGAAATTAGTACCCAATAGTACCGGCGACTTGCCTGAAGAGTTCAAGAACGAGATTGAAACTTCCGGAAGGATTAAGGTGGAGTTGATGATTGAGAACAAATTGTTCAAGTCTGATGGTGTTGATAATGCTGCTCATGATCATGATTGGGATTTGGATTATGCATTTAAGAACAATTACAAGAAGCACAAGGGCTTGATGAAAAGGCAGAAGAAAAAATTCGTACCAAATAGAAGTAGTACTCCTACTCATAACTTGCCTGAAGTGTTCAGGAAGAAGATTGAAACTTTGGGAGGGACTAAGGTGAACTTGGTGATTGAGAAGACATTGTACAAGTCTGACTTAGTACAGGGCGAAAACCGGTTGTCAATGCCTTTCAAACAAATCCGCTCCAAATTCTTGGAAGATGATGAAGTTAGAAGGCTTGCGAACTATGAAACCTTGACGGTCCCATTGATAGACACCATGCTACAAGAGAGAGAGATATGCTTGAGTCGGTGGAGCTTGCACACAAGCAAATGGTATGTGCTGAAAACTCAATGGTACAAGAAAATTGTTTTGAACAACGGACTTAGAAAAGGTGACTTGATCCAAGTTTGGTCATTCCGAGATAAGGTGAACAACCTTCACTTGGCACTTGTTTTGGTTGAGAGAAAAGGCGAGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

243

Amino Acids

28.71

Weight (kDa)

9.5

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	109 - 203	2.7e-13	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	3 cut(s)	32, 278, 455
AcuI	CTGAAG	2 cut(s)	117, 342
AfaI	GTAC	7 cut(s)	72, 82, 285, 301, 392, 408, 605
AfiI	CCNNNNNNNGG	2 cut(s)	673, 691
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	7 cut(s)	25, 106, 119, 169, 344, 439, 622
AluBI	AGCT	1 cut(s)	564
AluI	AGCT	1 cut(s)	564
AlwI	GGATC	1 cut(s)	643
Aor13HI	TCCGGA	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	3 cut(s)	32, 278, 455
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	376, 385, 653, 688
AvaII	GGWCC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	199
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmcAI	AGTACT	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	571
BsaWI	WCCGGW	2 cut(s)	125, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 691
Bse118I	RCCGGY	2 cut(s)	83, 420
BseAI	TCCGGA	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	673, 691
BseXI	GCAGC	1 cut(s)	178
BshTI	ACCGGT	1 cut(s)	420
BsiSI	CCGG	3 cut(s)	84, 126, 421
BslFI	GGGAC	2 cut(s)	370, 494
BslI	CCNNNNNNNGG	2 cut(s)	673, 691
BsmFI	GGGAC	2 cut(s)	370, 494
Bsp13I	TCCGGA	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	199, 648
BspACI	CCGC	1 cut(s)	448
BspEI	TCCGGA	1 cut(s)	125
BspHI	TCATGA	2 cut(s)	196, 202
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	83, 420
BsrGI	TGTACA	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	83, 420
BssMI	GATC	2 cut(s)	199, 648
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	486, 566
BstDEI	CTNAG	3 cut(s)	360, 403, 632
BstKTI	GATC	2 cut(s)	202, 651
BstMBI	GATC	2 cut(s)	199, 648
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	486, 566
CciI	TCATGA	2 cut(s)	196, 202
Cfr10I	RCCGGY	2 cut(s)	83, 420
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	7 cut(s)	71, 81, 284, 300, 391, 407, 604
CspAI	ACCGGT	1 cut(s)	420
CviAII	CATG	4 cut(s)	47, 197, 203, 526
CviJI	RGCY	3 cut(s)	255, 484, 564
CviKI_1	RGCY	3 cut(s)	255, 484, 564
CviQI	GTAC	7 cut(s)	71, 81, 284, 300, 391, 407, 604
DdeI	CTNAG	3 cut(s)	360, 403, 632
DpnI	GATC	2 cut(s)	201, 650
DpnII	GATC	2 cut(s)	199, 648
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	117, 342
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	4 cut(s)	50, 200, 206, 529
FalI	AAGNNNNNCTT	4 cut(s)	353, 385, 386, 418
FaqI	GGGAC	2 cut(s)	370, 494
FatI	CATG	4 cut(s)	46, 196, 202, 525
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	192
HapII	CCGG	3 cut(s)	84, 126, 421
Hin1II	CATG	4 cut(s)	50, 200, 206, 529
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	3 cut(s)	84, 126, 421
HphI	GGTGA	4 cut(s)	376, 385, 653, 688
Hpy166II	GTNNAC	2 cut(s)	367, 679
Hpy188I	TCNGA	3 cut(s)	175, 400, 668
Hpy188III	TCNNGA	5 cut(s)	106, 126, 197, 203, 331
Hpy8I	GTNNAC	2 cut(s)	367, 679
HpyAV	CCTTC	3 cut(s)	123, 474, 695
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	224, 568
HpyF3I	CTNAG	3 cut(s)	360, 403, 632
Hsp92II	CATG	4 cut(s)	50, 200, 206, 529
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 648
LmnI	GCTCC	2 cut(s)	455, 561
LpnPI	CCDG	7 cut(s)	97, 108, 139, 316, 333, 395, 434
Lsp1109I	GCAGC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	2 cut(s)	201, 650
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	2 cut(s)	199, 648
MboII	GAAGA	6 cut(s)	110, 283, 346, 349, 394, 476
MluCI	AATT	7 cut(s)	32, 65, 161, 235, 278, 455, 612
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	2 cut(s)	347, 715
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	3 cut(s)	8, 135, 228
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	3 cut(s)	84, 126, 421
NdeII	GATC	2 cut(s)	199, 648
NlaIII	CATG	4 cut(s)	50, 200, 206, 529
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	641
NsiI	ATGCAT	1 cut(s)	226
PagI	TCATGA	2 cut(s)	196, 202
PdmI	GAANNNNTTC	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	508
RsaI	GTAC	7 cut(s)	72, 82, 285, 301, 392, 408, 605
RsaNI	GTAC	7 cut(s)	71, 81, 284, 300, 391, 407, 604
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	8, 135, 228
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	199, 648
Sau96I	GGNCC	1 cut(s)	508
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	1 cut(s)	562
SetI	ASST	8 cut(s)	8, 141, 366, 503, 566, 643, 678, 687
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	7 cut(s)	32, 65, 161, 235, 278, 455, 612
SsiI	CCGC	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	508
TasI	AATT	7 cut(s)	32, 65, 161, 235, 278, 455, 612
TatI	WGTACW	3 cut(s)	299, 390, 406
Tru1I	TTAA	3 cut(s)	8, 135, 228
Tru9I	TTAA	3 cut(s)	8, 135, 228
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	3 cut(s)	275, 486, 510
TspGWI	ACGGA	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	3 cut(s)	32, 278, 455
XmnI	GAANNNNTTC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	301
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.