Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

47893949 .. 47894505

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTGGCTATATGTATCTCCATAGCTGCAACAGCTAGTGCAGCAGTGTTGTGGAACAAGAGAAGTAATGCTAAGGAGTTAAAGCAGGTTCAGCACATAGAAGCCTCATCACCAAGGGGTTCGGAGGTGTATAATGCAGAAAGAGAGTTGGAAAGCCTTCCTCAACAGTCTCTTGTCCAAGCAACCAATGTGCACTATGGTCAAAGACCTGACCTCAAGAGGATTCTATTTGAGTGCAAAGGATCAAGTGTTGGGGTTCTTGCTAGTGGACCGAAGAAGATGAGGCATGAGGTTGCAACCTTTTGTTCATCTGGTTTGGCAGAAAATATGCATTTTGAGTCCATCAGCTTCAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

8.52

Isoelectric Point (pI)

66.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	26, 35, 348, 354
AluI	AGCT	4 cut(s)	26, 35, 348, 354
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	26, 41
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	13, 53
BccI	CCATC	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	36, 264
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	27, 42
BlsI	GCNGC	2 cut(s)	28, 43
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	13, 53
BsgI	GTGCAG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 91
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	13, 53
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	7 cut(s)	8, 26, 35, 104, 156, 348, 354
CviKI_1	RGCY	7 cut(s)	8, 26, 35, 104, 156, 348, 354
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	290
FaiI	YATR	8 cut(s)	11, 13, 23, 98, 132, 198, 288, 329
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	27, 42
Fsp4HI	GCNGC	2 cut(s)	27, 42
FspBI	CTAG	2 cut(s)	36, 264
GluI	GCNGC	2 cut(s)	27, 42
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	2 cut(s)	223, 338
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	2 cut(s)	193, 269
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	193, 269
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	7 cut(s)	29, 41, 137, 193, 237, 296, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 91
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	242
LpnPI	CCDG	4 cut(s)	71, 222, 297, 340
Lsp1109I	GCAGC	2 cut(s)	13, 53
MaeI	CTAG	2 cut(s)	36, 264
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	2 cut(s)	286, 289
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	115, 118, 171, 213, 224, 276, 283
Mph1103I	ATGCAT	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 91
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	28, 43
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	27, 42
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SspMI	CTAG	2 cut(s)	36, 264
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	26, 41
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	36, 264
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.