Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8180978.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 599

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8180978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

atgttagacctcatcctcccagcttcgggcacaaatttggacatttcttgcttgcaattacagattgaagcttacgtgacgagagagaaccaacccgtaacacataaccacaagcctctgcaaacaatatggttcaacccagacccattggactcaccagtttctgcagtattaggccgaaacagttggctttggcttggagtgatcatagcaacctccttcgtcattttcctcgtgctaatgggaatcctcacacgatattacatataccccattgaccataactctaatatgatatactctgcctcttatagatctgccttaaacatgttattgctatgtgtttccatagccacaactgcaactgcagttttcctatggaataagaaacaaaattcaaaggagatgggacatattcaagccatagacacaccaccacagattactacttcaccaagcgctcggttttacaatgctggtcaagaacttgaaagtcttccccaccagtcctttgtccaatcgacaaaggtgcactatggcacaaggccggatcttcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

6.57

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	34, 394
AfeI	AGCGCT	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	25, 26
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	6 cut(s)	68, 136, 399, 419, 491, 557
AluBI	AGCT	2 cut(s)	23, 71
AluI	AGCT	2 cut(s)	23, 71
Alw21I	GWGCWC	1 cut(s)	534
Alw44I	GTGCAC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	460
AoxI	GGCC	2 cut(s)	175, 545
ApaLI	GTGCAC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	34, 394
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	147, 444
BaeGI	GKGCMC	2 cut(s)	32, 534
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	534
BccI	CCATC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BclI	TGATCA	1 cut(s)	204
BfmI	CTRYAG	2 cut(s)	165, 366
BfoI	RGCGCY	1 cut(s)	462
BglII	AGATCT	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 26
Bse1I	ACTGG	2 cut(s)	158, 505
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	25, 26
BseNI	ACTGG	2 cut(s)	158, 505
BseSI	GKGCMC	2 cut(s)	32, 534
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	177, 547
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	25, 26
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	177, 547
Bsp1286I	GDGCHC	2 cut(s)	32, 534
Bsp143I	GATC	3 cut(s)	204, 314, 550
BspANI	GGCC	2 cut(s)	177, 547
BspMAI	CTGCAG	2 cut(s)	169, 370
BspPI	GGATC	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	158, 505
BssMI	GATC	3 cut(s)	204, 314, 550
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	207, 317, 553
BstMBI	GATC	3 cut(s)	204, 314, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	331
BstSFI	CTRYAG	2 cut(s)	165, 366
BstSLI	GKGCMC	2 cut(s)	32, 534
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	314, 550
BstYI	RGATCY	2 cut(s)	314, 550
BsuRI	GGCC	2 cut(s)	177, 547
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	461
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	9 cut(s)	23, 71, 115, 177, 190, 196, 353, 422, 547
CviKI_1	RGCY	9 cut(s)	23, 71, 115, 177, 190, 196, 353, 422, 547
DpnI	GATC	3 cut(s)	206, 316, 552
DpnII	GATC	3 cut(s)	204, 314, 550
Eco47III	AGCGCT	1 cut(s)	460
FaeI	CATG	1 cut(s)	331
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	204
GlaI	GCGC	1 cut(s)	460
GsaI	CCCAGC	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	177, 547
HapII	CCGG	1 cut(s)	548
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	2 cut(s)	152, 246
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	147, 444
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	55, 121, 167, 362, 368, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	204, 314, 550
LpnPI	CCDG	5 cut(s)	33, 153, 171, 462, 518
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	76, 97
MalI	GATC	3 cut(s)	206, 316, 552
MboI	GATC	3 cut(s)	204, 314, 550
MboII	GAAGA	2 cut(s)	488, 545
MflI	RGATCY	2 cut(s)	314, 550
MhlI	GDGCHC	2 cut(s)	32, 534
MluCI	AATT	3 cut(s)	34, 56, 394
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	20, 26, 126, 226, 242, 260, 316
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	1 cut(s)	323
MspI	CCGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	3 cut(s)	204, 314, 550
NlaIII	CATG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	76
PscI	ACATGT	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	19
PstI	CTGCAG	2 cut(s)	169, 370
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	314, 550
SaqAI	TTAA	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	204, 314, 550
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	32, 534
SetI	ASST	6 cut(s)	12, 25, 73, 78, 218, 531
SfcI	CTRYAG	2 cut(s)	165, 366
Sse9I	AATT	3 cut(s)	34, 56, 394
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	34, 56, 394
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	530
XapI	RAATTY	2 cut(s)	34, 394
XceI	RCATGY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.