Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Forward (+)

19136960 .. 19137190

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTCATAAATGTGCCTAGTATTTCCAAGCTGCAATGGCATCCTTTCACTGTTACTTCAAACAGTAATTTGGAGCCAGAGAAGATCAGTGTCGTCATCAAAGGTGAAGGAAGTTGGACCAGGAAGCTTTACCAAGTCCTTTCATCGCCTTCTACAAGTGATCGGATTGAGGCTGCAGTTGAAGGGCCTTATGGACCTGATGCAACTCATTTTCTAAGGTTTGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

76

Amino Acids

8.58

Weight (kDa)

6.72

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_8	PF08022	1 - 67	2.7e-18	FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	60, 182, 224
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	2 cut(s)	31, 127
AluI	AGCT	2 cut(s)	31, 127
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	31, 173
AspS9I	GGNCC	3 cut(s)	117, 185, 194
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	117, 194
BbvI	GCAGC	2 cut(s)	18, 160
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	2 cut(s)	32, 174
BlsI	GCNGC	2 cut(s)	33, 175
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	117, 194
BmgT120I	GGNCC	3 cut(s)	117, 185, 194
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	49, 190
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	18, 160
BshFI	GGCC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	84, 160
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	41
BssMI	GATC	2 cut(s)	84, 160
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	52, 65
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	87, 163
BstMBI	GATC	2 cut(s)	84, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	18, 160
BsuRI	GGCC	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	48, 94
Cfr13I	GGNCC	3 cut(s)	117, 185, 194
CviJI	RGCY	5 cut(s)	31, 76, 127, 173, 187
CviKI_1	RGCY	5 cut(s)	31, 76, 127, 173, 187
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	86, 162
DpnII	GATC	2 cut(s)	84, 160
Eco47I	GGWCC	2 cut(s)	117, 194
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	2 cut(s)	8, 192
Fnu4HI	GCNGC	2 cut(s)	32, 174
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	32, 174
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	32, 174
HaeIII	GGCC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	125
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	101, 159, 176
HpyCH4III	ACNGT	2 cut(s)	52, 65
HpyCH4V	TGCA	3 cut(s)	34, 176, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	84, 160
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	90, 106, 133, 210
Lsp1109I	GCAGC	2 cut(s)	18, 160
LweI	GCATC	2 cut(s)	49, 190
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	86, 162
MboI	GATC	2 cut(s)	84, 160
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	163
MslI	CAYNNNNRTG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	84, 160
NlaIV	GGNNCC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	33, 175
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	117, 185, 194
PstI	CTGCAG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	32, 174
Sau3AI	GATC	2 cut(s)	84, 160
Sau96I	GGNCC	3 cut(s)	117, 185, 194
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	5 cut(s)	33, 106, 129, 199, 221
SfaNI	GCATC	2 cut(s)	49, 190
SfcI	CTRYAG	1 cut(s)	174
SgeI	CNNG	8 cut(s)	30, 40, 89, 132, 133, 146, 168, 209
SinI	GGWCC	2 cut(s)	117, 194
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	52, 65
TasI	AATT	1 cut(s)	67
TscAI	CASTG	2 cut(s)	55, 94
TseI	GCWGC	2 cut(s)	31, 173
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	55, 94
VpaK11BI	GGWCC	2 cut(s)	117, 194
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.