Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004595.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

10045 .. 11400

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004595.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggattcaaatgtggtggtcataagctcatcacctccgtcccatgaaggaatcagaatggtacggacagctataaggctgttcttagtgttggtggtgtttggagggtgtgttttgatctatgtcatgatgcccacaaacacatataggcaaatatggctgcctcgaatccgagctgaggccggctcaagtacctattttggagcgcaaggttcaactcttctgttttacacatttcccattatgttcattgctgtgatgggttgtgtgtatctccatctgggaaagaagattactgattataaaatggaaagcagtgatggcaaaacgaacagtatagctgtgtggaaacagcccatgctggtgaaaggtcctttaggcattgtttctgggatagagctcaccttcttcatcatgttcattgcactcctaatttggtctatctccacgtacttgaccaacgaacccaatcaacccattatctttctcaacgatttggctatcaaggagactaaggagttcgatttggctgtaatggagaccaaggagttcgatttggctgtaaaggagaccaaggagttcgagttgcaaacttgggagttcgattattggagttcgatttggattttggagtttgatttgcagacttggagttcgatttgcagacttgaagaggaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

227

Amino Acids

26.06

Weight (kDa)

4.93

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AfaI	GTAC	3 cut(s)	63, 193, 452
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	9, 216, 671
AluBI	AGCT	5 cut(s)	27, 71, 176, 341, 400
AluI	AGCT	5 cut(s)	27, 71, 176, 341, 400
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	3 cut(s)	503, 533, 563
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	24, 376, 394
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	253, 285, 314
BcoDI	GTCTC	3 cut(s)	503, 533, 563
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	450
BsaI	GGTCTC	2 cut(s)	533, 563
BsaJI	CCNNGG	2 cut(s)	543, 573
BsaXI	ACNNNNNCTCC	4 cut(s)	96, 126, 569, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	249, 420
BseDI	CCNNGG	2 cut(s)	543, 573
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	249, 420
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	503, 533, 563
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	2 cut(s)	533, 563
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	126
BspTNI	GGTCTC	2 cut(s)	533, 563
BsrDI	GCAATG	2 cut(s)	249, 420
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	543, 573
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	543, 573
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	225, 666
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	85, 177, 513
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	3 cut(s)	503, 533, 563
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 321
BstV1I	GCAGC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	62, 192, 451
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	4 cut(s)	44, 127, 358, 415
CviQI	GTAC	3 cut(s)	62, 192, 451
DdeI	CTNAG	3 cut(s)	85, 177, 513
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	225, 666
EarI	CTCTTC	2 cut(s)	225, 666
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	543, 573
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	2 cut(s)	533, 563
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	543, 573
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	2 cut(s)	543, 573
FaeI	CATG	4 cut(s)	47, 130, 361, 418
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	43, 126, 357, 414
Fnu4HI	GCNGC	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	47, 130, 361, 418
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	5, 51, 168
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	24, 376, 394
Hpy188I	TCNGA	2 cut(s)	56, 173
Hpy188III	TCNNGA	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	41, 415
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	425, 589, 643, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 321
HpyF3I	CTNAG	3 cut(s)	85, 177, 513
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	4 cut(s)	47, 130, 361, 418
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	4 cut(s)	196, 266, 347, 375
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	449
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	4 cut(s)	212, 301, 400, 683
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	1 cut(s)	432
MnlI	CCTC	5 cut(s)	45, 98, 172, 174, 667
MroNI	GCCGGC	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	254, 362
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	157, 321
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	47, 130, 361, 418
PagI	TCATGA	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	5, 51, 168
PkrI	GCNGC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	63, 193, 452
RsaNI	GTAC	3 cut(s)	62, 192, 451
RseI	CAYNNNNRTG	2 cut(s)	254, 362
SacI	GAGCTC	1 cut(s)	402
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	254, 362
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	543, 573
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	7 cut(s)	166, 522, 552, 582, 603, 617, 656
TasI	AATT	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	5, 51, 168
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	60, 238, 400, 409
TspGWI	ACGGA	2 cut(s)	27, 79
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.