Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031595.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 436

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 218 bp

atgttcataaatgtgcctagtatttccaagctgcaatggcatccctacactgttacttcaaacagtagcttggagccagagaagatcagtgtcgtcattaaaggtgaaggaagttggaccaggaagctttaccaagtcctttcgtcgccttctacaagtgctcggattgaggctgctgttgaaggaccttatggacctgatgcaactcattttctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

72

Amino Acids

7.93

Weight (kDa)

6.71

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	60, 182
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	31, 69, 127
AluI	AGCT	3 cut(s)	31, 69, 127
Alw21I	GWGCWC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	31, 173
AspS9I	GGNCC	3 cut(s)	117, 185, 194
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	117, 185, 194
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	18, 160
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	32, 174
BlsI	GCNGC	2 cut(s)	33, 175
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	3 cut(s)	117, 185, 194
BmgT120I	GGNCC	3 cut(s)	117, 185, 194
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	49, 190
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	18, 160
BsiHKAI	GWGCWC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	41
BssMI	GATC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	52, 65
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	18, 160
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	48, 94
Cfr13I	GGNCC	3 cut(s)	117, 185, 194
CviJI	RGCY	5 cut(s)	31, 69, 76, 127, 173
CviKI_1	RGCY	5 cut(s)	31, 69, 76, 127, 173
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco47I	GGWCC	3 cut(s)	117, 185, 194
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	2 cut(s)	8, 192
Fnu4HI	GCNGC	2 cut(s)	32, 174
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	32, 174
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	32, 174
HindIII	AAGCTT	1 cut(s)	125
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	101, 159, 176
HpyCH4III	ACNGT	2 cut(s)	52, 65
HpyCH4V	TGCA	2 cut(s)	34, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	90, 106, 133, 210
Lsp1109I	GCAGC	2 cut(s)	18, 160
LweI	GCATC	2 cut(s)	49, 190
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	163
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	33, 175
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	117, 185, 194
PspPPI	RGGWCCY	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	32, 174
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	117, 185, 194
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	6 cut(s)	33, 71, 106, 129, 190, 199
SfaNI	GCATC	2 cut(s)	49, 190
SinI	GGWCC	3 cut(s)	117, 185, 194
SmiMI	CAYNNNNRTG	1 cut(s)	11
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	52, 65
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	55, 94
TseI	GCWGC	2 cut(s)	31, 173
TspRI	CASTG	2 cut(s)	55, 94
VpaK11BI	GGWCC	3 cut(s)	117, 185, 194
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.