Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

35717381 .. 35717995

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCTAGACCTGATTCTACCAATGTCTACCACCACACCATATGACATTTCCAATCTCCAGATACAAATTGAGGCATATGTAACAAGAGACACACAGCCAAAAGATAACTCAATGAACCTCAGAAGCATATGGTTCAAACCCCTTGCAACTGATGAACCCGTTTCAGCCATTTTGGGACCAAACCACTGGCTCTGGCTTGGCCTGATCATAACATCTTCCTTCATGATGTTCCTCATCTTGATTGGGATCGTCACCAGATATTACATTTTTCCGATCGATCACAACTCCAATAAGATTTTTTCGTCTCCTTTGAGGGCTTTGTTTAATATGTTGGCTATATGTATCTCCATAGCGGCAACAGCTAGTGCAGCAATGTTGTGGAACAAGGGAAGTAATGCCAAGGAGTTAAAGCAGGTTCAGCACATAGAAGCCTCACCACCAAGGGGTTCAGAGGTTTATAATGCAGAAAGAGAGTTAGAAAGCCTTCCTCAACAGTCCCTTGTCCAAGCCACCAATGTGCACTATGGTCGAAGGCCTGACCTCAAGAGTAAGTCATTTGATAACACCACTCTGTTGGAGCCAAAATTTGATTCAACTGTCGAGATAAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

204

Amino Acids

23.06

Weight (kDa)

6.42

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	136, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	574, 606
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	81, 309
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	2 cut(s)	199, 533
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	244, 426
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	380
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	81, 309
BfaI	CTAG	2 cut(s)	5, 363
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	354, 369
BlsI	GCNGC	2 cut(s)	355, 370
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	177, 579
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	399, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	399, 440
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	201, 535
BshVI	ATCGAT	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	522
BslFI	GGGAC	2 cut(s)	189, 481
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	81, 309
BsmBI	CGTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	189, 481
BsnI	GGCC	2 cut(s)	201, 535
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	204, 246, 273, 277
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	201, 535
BspCNI	CTCAG	1 cut(s)	132
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	177, 579
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	399, 440
BssMI	GATC	4 cut(s)	204, 246, 273, 277
BssT1I	CCWWGG	2 cut(s)	399, 440
Bst4CI	ACNGT	3 cut(s)	495, 598, 612
BstDEI	CTNAG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	207, 249, 276, 280
BstMAI	GTCTC	2 cut(s)	81, 309
BstMBI	GATC	4 cut(s)	204, 246, 273, 277
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 368, 418
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	380
BstXI	CCANNNNNNTGG	2 cut(s)	186, 574
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	201, 535
BsuTUI	ATCGAT	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	276
CviAII	CATG	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	4 cut(s)	206, 248, 275, 279
DpnII	GATC	4 cut(s)	204, 246, 273, 277
Eco130I	CCWWGG	2 cut(s)	399, 440
Eco147I	AGGCCT	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	399, 440
ErhI	CCWWGG	2 cut(s)	399, 440
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	1 cut(s)	226
FaqI	GGGAC	2 cut(s)	189, 481
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	3 cut(s)	40, 76, 128
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	354, 369
Fsp4HI	GCNGC	2 cut(s)	354, 369
FspBI	CTAG	2 cut(s)	5, 363
GluI	GCNGC	2 cut(s)	354, 369
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	201, 535
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	2 cut(s)	13, 590
HphI	GGTGA	2 cut(s)	244, 426
Hpy166II	GTNNAC	2 cut(s)	27, 520
Hpy188I	TCNGA	3 cut(s)	122, 273, 451
Hpy188III	TCNNGA	5 cut(s)	58, 223, 238, 544, 601
Hpy8I	GTNNAC	2 cut(s)	27, 520
HpyAV	CCTTC	3 cut(s)	229, 494, 525
HpyCH4III	ACNGT	3 cut(s)	495, 598, 612
HpyCH4V	TGCA	4 cut(s)	146, 368, 464, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 368, 418
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	204, 246, 273, 277
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	8 cut(s)	23, 71, 172, 178, 215, 268, 398, 549
Lsp1109I	GCAGC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	5, 363
MaeIII	GTNAC	2 cut(s)	79, 250
MalI	GATC	4 cut(s)	206, 248, 275, 279
MboI	GATC	4 cut(s)	204, 246, 273, 277
MboII	GAAGA	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	2 cut(s)	66, 584
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	8 cut(s)	64, 128, 242, 306, 442, 445, 498, 551
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	324, 407
MslI	CAYNNNNRTG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	359, 368, 418
NdeI	CATATG	3 cut(s)	40, 76, 128
NdeII	GATC	4 cut(s)	204, 246, 273, 277
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	177, 579
NmuCI	GTSAC	1 cut(s)	250
OliI	CACNNNNGTG	1 cut(s)	515
PagI	TCATGA	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	13, 590
PkrI	GCNGC	2 cut(s)	355, 370
Ple19I	CGATCG	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	177, 579
PspPI	GGNCC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	324, 407
SatI	GCNGC	2 cut(s)	354, 369
Sau3AI	GATC	4 cut(s)	204, 246, 273, 277
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	6 cut(s)	12, 120, 364, 417, 456, 543
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	66, 584
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	5, 363
StuI	AGGCCT	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	399, 440
TaaI	ACNGT	3 cut(s)	495, 598, 612
TaqI	TCGA	3 cut(s)	276, 529, 600
TasI	AATT	2 cut(s)	66, 584
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	13, 590
Tru1I	TTAA	2 cut(s)	324, 407
Tru9I	TTAA	2 cut(s)	324, 407
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	128, 168, 211
TspRI	CASTG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	2 cut(s)	5, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.