Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

10571913 .. 10572330

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAAAGCAGAAGCAATGACAGAAAGAAGAAGCGATTTGCAGTATGGAAACAGCCTATTTTGGTAAAAGGCCCCTTAGGAATTGTTTCTGGGATAGAGCTGGCCTTCTTCGCCATGTTCGTTGCACTCCTGATTTGGTCATTCTCAATGTATTTGCAGAGCAGTTTTGCTAAAATCTCAGCAGCAAGGCACCCCGATGAACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

70

Amino Acids

7.91

Weight (kDa)

10.11

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AoxI	GGCC	2 cut(s)	70, 102
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	73, 191
Bse21I	CCTNAGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	2 cut(s)	72, 104
BshNI	GGYRCC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	72, 104
BspANI	GGCC	2 cut(s)	72, 104
BspCNI	CTCAG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	73, 191
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	76, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	72, 104
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	55, 72, 100, 104
CviKI_1	RGCY	4 cut(s)	55, 72, 100, 104
DdeI	CTNAG	2 cut(s)	76, 178
Eco81I	CCTNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	71
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	46, 116
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	72, 104
Hin1II	CATG	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	41, 125, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	76, 178
Hsp92II	CATG	1 cut(s)	118
LpnPI	CCDG	3 cut(s)	75, 86, 143
Lsp1109I	GCAGC	1 cut(s)	194
MboII	GAAGA	2 cut(s)	40, 100
MluCI	AATT	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	85
MslI	CAYNNNNRTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	73, 191
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	73, 191
PspPI	GGNCC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	71
SetI	ASST	1 cut(s)	102
SgeI	CNNG	6 cut(s)	102, 113, 127, 142, 198, 206
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	81
TasI	AATT	1 cut(s)	81
TseI	GCWGC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.