Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

35723717 .. 35730394

Gene Structure 6678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG234400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTGGCTATATGTATCTCCATAGCTGCAACAGCTAGTGCAGCAGTGTTGTGGAACAAGAGAAGTAATGCTAAGGAGTTAAAGCAGGTTCAGCACATAGAAGCCTCATCACCAAGGGGTTCGGAGGTGTATAATGCAGAAAGAGAGTTGGAAAGCCTTCCTCAACAGTCTCTTGTCCAAGCAACCAATGTGCACTATGGTCAAAGACCTGACCTCAAGAGGATTCTATTTGAGTGCAAAGGATCAAGTGTTGGGGTTCTTGCTAGTGGACCGAAGAAGATGAGGCATGAGGATGCTCTCGGGGACTTGTTTAAGAATAAGAAAGAGAAATCTCATGTGGCGGATCTTTTACAAGACCAATTCGGATTGCTGAAGCTTCCCCTTCTTGCTTCTGCGGCTTACATAGGCGAATCCGTGGAAGGTCATCTGGGAATGGCCCAGCCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

149

Amino Acids

16.22

Weight (kDa)

8.55

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	2 cut(s)	341, 395
AclWI	GGATC	2 cut(s)	250, 351
AcuI	CTGAAG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	26, 35, 376
AluI	AGCT	3 cut(s)	26, 35, 376
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	250, 351
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	26, 41
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	269, 436
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	13, 53
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	36, 264
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	3 cut(s)	27, 42, 396
BlsI	GCNGC	3 cut(s)	28, 43, 397
Bme18I	GGWCC	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	269, 436
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	113, 414
BseDI	CCNNGG	2 cut(s)	113, 414
BseGI	GGATG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	13, 53
BseYI	CCCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	242, 343
BspACI	CCGC	2 cut(s)	341, 395
BspANI	GGCC	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	250, 351
BssECI	CCNNGG	2 cut(s)	113, 414
BssMI	GATC	2 cut(s)	242, 343
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	245, 346
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	242, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 91, 395
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	13, 53
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	437
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	269, 436
CviAII	CATG	3 cut(s)	287, 335, 447
CviJI	RGCY	9 cut(s)	8, 26, 35, 104, 156, 376, 398, 437, 442
CviKI_1	RGCY	9 cut(s)	8, 26, 35, 104, 156, 376, 398, 437, 442
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	244, 345
DpnII	GATC	2 cut(s)	242, 343
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	290, 338, 450
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	286, 334, 446
Fnu4HI	GCNGC	3 cut(s)	27, 42, 396
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	27, 42, 396
FspBI	CTAG	2 cut(s)	36, 264
GluI	GCNGC	3 cut(s)	27, 42, 396
GsaI	CCCAGC	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	290, 338, 450
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	223, 410
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	2 cut(s)	193, 269
Hpy188I	TCNGA	2 cut(s)	124, 365
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	193, 269
HpyAV	CCTTC	3 cut(s)	167, 392, 413
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	29, 41, 137, 193, 237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 91, 395
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	290, 338, 450
Kzo9I	GATC	2 cut(s)	242, 343
LpnPI	CCDG	3 cut(s)	71, 222, 413
Lsp1109I	GCAGC	2 cut(s)	13, 53
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	36, 264
MalI	GATC	2 cut(s)	244, 345
MboI	GATC	2 cut(s)	242, 343
MboII	GAAGA	2 cut(s)	286, 289
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	115, 118, 171, 213, 224, 276, 283
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	2 cut(s)	80, 312
MslI	CAYNNNNRTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 91, 395
NdeII	GATC	2 cut(s)	242, 343
NlaIII	CATG	3 cut(s)	290, 338, 450
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	223, 410
PkrI	GCNGC	3 cut(s)	28, 43, 397
PspFI	CCCAGC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	269, 436
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	80, 312
SatI	GCNGC	3 cut(s)	27, 42, 396
Sau3AI	GATC	2 cut(s)	242, 343
Sau96I	GGNCC	2 cut(s)	269, 436
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	8 cut(s)	28, 37, 90, 129, 211, 216, 378, 424
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	341, 395
SspMI	CTAG	2 cut(s)	36, 264
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	359
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	223, 410
Tru1I	TTAA	2 cut(s)	80, 312
Tru9I	TTAA	2 cut(s)	80, 312
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	26, 41
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	36, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.