Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386121.1

Orthogroup ID

OG0000738

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1083

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386121.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtttgttcctgcaggtgcaaatcttctggtattcacatttcccattatgttgattgctgtgatgggttgtgtgtatctccatctgggaaagaagttgaatgactataaaatggaaaccagtgaaggcaaaacgaaccaattcgctatgtggaaacagcccatgctggtgaaaggtcctcttggcattgtttctgggatagagctcaccttcttcatcatgttcattgcactactaatttggtcaatctccacgtacttgaccaacggttttgacaaaatcacaccacaatccgcggcaaagagccatgaaaaagtatgggaagctaaattggagagtgcatcattgaggctaggacttgtgggtaacatatgccttgcacttctcttctttccggtcgctcgtggctcgtcaatattgcctctgtttggcctcacctctgaggctagcatcaagtatcatatatggctaggaaacatagtcatggtgctcttcaccgctcatggaatttgttacatcatctattgggctgttacagatcagattttccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0015688 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0042592 GO:0043207 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055114 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

184

Amino Acids

20.52

Weight (kDa)

8.76

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01580 AT1G01580 AT1G01590 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020 AT1G23020
fragaria_vesca	FvH4_7g14960 FvH4_7g14960
malus_domestica	MD01G1068100.v1.1 MD01G1068200.v1.1 MD01G1207100.v1.1 MD07G1278000.v1.1
prunus_persica	Prupe.2G174300_v2.0.a1 Prupe.2G174300_v2.0.a1 Prupe.2G299800_v2.0.a1
pyrus_communis	pycom01g09740 pycom01g21770 pycom01g21780
rosa_chinensis	RchiOBHm_Chr1g0356941 RchiOBHm_Chr1g0356951 RchiOBHm_Chr1g0356961 RchiOBHm_Chr1g0378111
rosa_laevigata	RLG00000026471 RLG00000028067 RLG00000028068 RLG00000028070
rosa_multiflora	Rmu_co8127120.1_g000001 Rmu_co8180978.1_g000001 Rmu_co8386121.1_g000001 Rmu_sc0000166.1_g000020 Rmu_sc0000166.1_g000024 Rmu_sc0004595.1_g000001 Rmu_sc0004595.1_g000002 Rmu_sc0004595.1_g000005 Rmu_sc0031595.1_g000001
rosa_roxburghii	Rroxscaffold_156G00440280 Rroxscaffold_4G00280770 Rroxscaffold_4G00299170 Rroxscaffold_4G00299190 Rroxscaffold_4G00299200
rosa_rugosa	Rorug01G0252100 Rorug01G0252200 Rorug01G0252300 Rorug01G0252400 Rorug01G0252500
rosa_samantha	Rh1AG266800 Rh1AG266900 Rh1AG267000 Rh1AG423400 Rh1BG234100 Rh1BG234200 Rh1BG234300 Rh1BG234400 Rh1BG234500 Rh1BG385200 Rh1CG250200 Rh1CG250300 Rh1CG250400 Rh1CG399200 Rh1DG261600 Rh1DG261800 Rh1DG261900 Rh1DG416400
rosa_wichuraiana	Rw1G023550 Rw1G023560 Rw1G023570 Rw1G037380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	500
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	294, 296, 498
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	205, 326
AluI	AGCT	2 cut(s)	205, 326
Alw21I	GWGCWC	2 cut(s)	207, 492
AoxI	GGCC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	181, 199, 427, 487
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	207, 492
BccI	CCATC	2 cut(s)	58, 90
BfaI	CTAG	3 cut(s)	353, 447, 470
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmsI	GCATC	2 cut(s)	350, 459
BmtI	GCTAGC	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	207, 492
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	207, 492
Bsp143I	GATC	1 cut(s)	538
BspACI	CCGC	3 cut(s)	294, 296, 498
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	5
BspOI	GCTAGC	1 cut(s)	450
BspQI	GCTCTTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	538
BssSI	CACGAG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	392, 497
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	538
BstMCI	CGRYCG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	176
Cfr42I	CCGCGG	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	5 cut(s)	163, 220, 308, 484, 503
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	392, 497
EarI	CTCTTC	2 cut(s)	392, 497
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	5 cut(s)	166, 223, 311, 487, 506
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	5 cut(s)	162, 219, 307, 483, 502
FauNDI	CATATG	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	3 cut(s)	353, 447, 470
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	5 cut(s)	166, 223, 311, 487, 506
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	4 cut(s)	181, 199, 427, 487
Hpy188I	TCNGA	2 cut(s)	442, 543
HpyAV	CCTTC	2 cut(s)	119, 220
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	14, 20, 230, 341, 380
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	5 cut(s)	166, 223, 311, 487, 506
KspI	CCGCGG	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	538
LguI	GCTCTTC	1 cut(s)	497
LpnPI	CCDG	7 cut(s)	14, 24, 71, 133, 152, 180, 408
LweI	GCATC	2 cut(s)	350, 459
MaeI	CTAG	3 cut(s)	353, 447, 470
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	3 cut(s)	365, 512, 532
MalI	GATC	1 cut(s)	540
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	1 cut(s)	538
MboII	GAAGA	4 cut(s)	17, 205, 379, 484
MhlI	GDGCHC	2 cut(s)	207, 492
MluCI	AATT	4 cut(s)	140, 237, 329, 507
MnlI	CCTC	6 cut(s)	189, 342, 432, 436, 443, 448
MroXI	GAANNNNTTC	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	167, 482
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	1 cut(s)	538
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	166, 223, 311, 487, 506
PaqCI	CACCTGC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	2 cut(s)	167, 482
SacI	GAGCTC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	497
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	1 cut(s)	176
SbfI	CCTGCAGG	1 cut(s)	16
SdaI	CCTGCAGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	207, 492
SetI	ASST	7 cut(s)	19, 178, 207, 212, 257, 328, 440
SfaNI	GCATC	2 cut(s)	350, 459
SfcI	CTRYAG	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	297
SgrBI	CCGCGG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	167, 482
Sse8387I	CCTGCAGG	1 cut(s)	16
Sse9I	AATT	4 cut(s)	140, 237, 329, 507
SsiI	CCGC	3 cut(s)	294, 296, 498
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	3 cut(s)	353, 447, 470
SstI	GAGCTC	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	257
TasI	AATT	4 cut(s)	140, 237, 329, 507
TauI	GCSGC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	205, 214, 324
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	3 cut(s)	353, 447, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.