Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000918

Physical Location & Seq

Genomic Coordinates Forward (+)

32999159 .. 32999539

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1275500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGGAACCCGTGGCAGCCCACGATGAATTTGTTGATGGCATTTCCACAAAAGATGTTGTTGCCGACAAATCATCCGGCCTTCGCGTCCGAATTTATTTACCGGAGCGAAAGCCGGAGGGTTATGACACCAAGCTACCAATAATCCTCCATTTCCACGGGGGTGGCTTTTGCATAACTCAAGCTGATTGGTACATGTACTACCACATATGCACTAAACTATCTCGCTCCATGAATGCCATTGTAGTCTCTGTCTATCAGAGGCTCGCACCGGAGCACCGTCTCCCGGCTGCCATTGAGGACGGCTATTCCTCTCTCCTTTGGCTCCGATCATTGGCTCGAGGTGAGCAAAACGCCACGCCTCAGCCATGCAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

6.95

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	26 - 90	7.6e-06	Carboxylesterase family
BD-FAE	PF20434	39 - 113	1.3e-06	BD-FAE
Abhydrolase_3	PF07859	49 - 124	1.2e-20	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04030 FvH4_7g04040 FvH4_7g04070
malus_domestica	MD02G1275500.v1.1 MD02G1275600.v1.1 MD02G1275900.v1.1 MD02G1276300.v1.1 MD02G1276600.v1.1 MD07G1043400.v1.1
prunus_persica	Prupe.2G044700_v2.0.a1 Prupe.2G045000_v2.0.a1 Prupe.2G045300_v2.0.a1
pyrus_communis	pycom02g23560 pycom02g23580 pycom07g03080
rosa_chinensis	RchiOBHm_Chr1g0327821 RchiOBHm_Chr1g0327831 RchiOBHm_Chr1g0327841 RchiOBHm_Chr1g0327851 RchiOBHm_Chr1g0327881 RchiOBHm_Chr1g0327901
rosa_laevigata	RLG00000029959 RLG00000029962 RLG00000029966 RLG00000029967
rosa_multiflora	Rmu_co8316237.1_g000001 Rmu_sc0005527.1_g000004 Rmu_sc0005693.1_g000003 Rmu_sc0005693.1_g000016 Rmu_sc0005693.1_g000026
rosa_roxburghii	Rroxscaffold_4G00322160 Rroxscaffold_4G00322190 Rroxscaffold_4G00322210 Rroxscaffold_4G00322290 Rroxscaffold_4G00322300
rosa_rugosa	Rorug01G0071200 Rorug01G0071300 Rorug01G0071400 Rorug01G0071600 Rorug01G0072300 Rorug06G0427900 Rorug06G0427900
rosa_samantha	Rh1AG077600 Rh1AG087500 Rh1AG087600 Rh1AG087700 Rh1AG087900 Rh1AG088100 Rh1BG070600 Rh1BG070700 Rh1BG070900 Rh1CG085500 Rh1CG086200 Rh1CG086400 Rh1DG091900 Rh1DG092100 Rh1DG092200 Rh1DG092400 Rh1DG092600 Rh1DG092800 Rh7BG026600
rosa_wichuraiana	Rw1G006820 Rw1G006830 Rw1G006840 Rw1G006870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	29, 93
AfaI	GTAC	2 cut(s)	194, 200
AfiI	CCNNNNNNNGG	2 cut(s)	286, 334
AflIII	ACRYGT	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	136, 185
AluI	AGCT	2 cut(s)	136, 185
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	253, 287
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	17, 290
ApoI	RAATTY	2 cut(s)	29, 93
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	29, 277
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	253, 287
BisI	GCNGC	2 cut(s)	18, 291
BlsI	GCNGC	2 cut(s)	19, 292
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	9, 326
BmrFI	CCNGG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	12, 157
BsaWI	WCCGGW	2 cut(s)	103, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 334
BseDI	CCNNGG	2 cut(s)	12, 157
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	286, 334
BseMII	CTCAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	29, 277
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	5 cut(s)	78, 104, 116, 272, 287
BslI	CCNNNNNNNGG	2 cut(s)	286, 334
BsmAI	GTCTC	2 cut(s)	253, 287
BsmBI	CGTCTC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	9, 326
BssECI	CCNNGG	2 cut(s)	12, 157
BssMI	GATC	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	2 cut(s)	12, 157
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	2 cut(s)	253, 287
BstMBI	GATC	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	29, 277
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	2 cut(s)	12, 157
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	267
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	193, 199
CviAII	CATG	3 cut(s)	196, 232, 369
CviQI	GTAC	2 cut(s)	193, 199
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	199, 235, 372
FaiI	YATR	8 cut(s)	126, 176, 197, 209, 211, 233, 370, 379
FatI	CATG	3 cut(s)	195, 231, 368
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	18, 291
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	18, 291
GluI	GCNGC	2 cut(s)	18, 291
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	5 cut(s)	78, 104, 116, 272, 287
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	199, 235, 372
HpaII	CCGG	5 cut(s)	78, 104, 116, 272, 287
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	92, 261, 329
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	174, 213, 372
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	199, 235, 372
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	4 cut(s)	106, 233, 274, 330
LpnPI	CCDG	5 cut(s)	91, 117, 129, 285, 300
Lsp1109I	GCAGC	2 cut(s)	29, 277
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	29, 93
MnlI	CCTC	7 cut(s)	112, 158, 255, 292, 322, 335, 372
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	5 cut(s)	78, 104, 116, 272, 287
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	199, 235, 372
NlaIV	GGNNCC	2 cut(s)	9, 326
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	339
PciI	ACATGT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	19, 292
PscI	ACATGT	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	9, 326
PspXI	VCTCGAGB	1 cut(s)	339
RsaI	GTAC	2 cut(s)	194, 200
RsaNI	GTAC	2 cut(s)	193, 199
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	2 cut(s)	18, 291
Sau3AI	GATC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	3 cut(s)	138, 187, 346
Sfr274I	CTCGAG	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	180, 339
SmoI	CTYRAG	2 cut(s)	180, 339
Sse9I	AATT	2 cut(s)	29, 93
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	29, 93
TatI	WGTACW	1 cut(s)	198
TseI	GCWGC	2 cut(s)	17, 290
TspDTI	ATGAA	2 cut(s)	42, 248
XapI	RAATTY	2 cut(s)	29, 93
XceI	RCATGY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.