Rorug06G0427900

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000455
Physical Location & Seq
Forward (+)
56438229 .. 56441486
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0427900.1

Sequence Viewer

Length: 954 bp
ATGGAGGAAAATCGAGGGAATAAGTTTGCTTTTCAAGGGCTTCCTGAATCCAATTCAGTGAAGGTATACAAGATGATTGGATCATTTCTTACCAGAGGACTTGTGATGATCCTTGGCTATGCTTATCCAGCCTATGAGTGCTACAAAACTGTTGAAAAGAACAAGCCGGAGATCGAACAACTTCGCTTTTGGTGTCAGTATTGGATTTTGGTGGCTGTTTTGACGGTATGTGAGAGAGTTGGTGATGCTTTCGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACTTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATTTTGCTATTTTATATTGGCAAAGAGCTGCAAGCTACGGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAACCCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCGGCTACAACAACGCAATCCCAACCCGAAGAACCACCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGGCTAAAGCTGCCCCCCAAGCAGCAGGTTCCAATACTCAAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCAGCAGCAACTGAAAATACAAATCCGCCCCCGAAAGATACACTAATGGAAGGTCCCATTCGGCAAACACGAGCATCATTAAGGAAAACCCGTTCTGCATCTGCAGCAAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

317

Amino Acids

35.33

Weight (kDa)

9.3

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 43 - 121 4.9e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 863
AclWI GGATC 2 cut(s) 88, 103
AcoI YGGCCR 1 cut(s) 781
AcuI CTGAAG 2 cut(s) 819, 843
AfaI GTAC 2 cut(s) 341, 658
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 2 cut(s) 35, 155
AjnI CCWGG 1 cut(s) 541
AloI GAACNNNNNNTCC 2 cut(s) 913, 945
AluBI AGCT 6 cut(s) 281, 452, 459, 590, 722, 764
AluI AGCT 6 cut(s) 281, 452, 459, 590, 722, 764
AlwI GGATC 2 cut(s) 88, 103
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 2 cut(s) 518, 781
ApeKI GCWGC 7 cut(s) 452, 500, 569, 722, 734, 842, 941
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 673, 890
AsuHPI GGTGA 2 cut(s) 254, 434
AvaII GGWCC 2 cut(s) 673, 890
BalI TGGCCA 1 cut(s) 783
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BauI CACGAG 1 cut(s) 906
BbvCI CCTCAGC 1 cut(s) 838
BbvI GCAGC 6 cut(s) 439, 487, 556, 709, 746, 854
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 543
BfaI CTAG 2 cut(s) 414, 666
BfmI CTRYAG 1 cut(s) 939
BfuAI ACCTGC 1 cut(s) 728
BisI GCNGC 7 cut(s) 453, 501, 570, 723, 735, 843, 942
BlsI GCNGC 7 cut(s) 454, 502, 571, 724, 736, 844, 943
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 2 cut(s) 673, 890
BmgT120I GGNCC 2 cut(s) 673, 890
BmiI GGNNCC 4 cut(s) 264, 702, 742, 892
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 3 cut(s) 235, 920, 944
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 838
BsaJI CCNNGG 2 cut(s) 112, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 112, 515
BseGI GGATG 1 cut(s) 833
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 654
BseXI GCAGC 6 cut(s) 439, 487, 556, 709, 746, 854
BshFI GGCC 2 cut(s) 520, 783
BsiSI CCGG 2 cut(s) 167, 605
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 876
BsnI GGCC 2 cut(s) 520, 783
Bsp143I GATC 3 cut(s) 80, 108, 171
BspACI CCGC 1 cut(s) 863
BspANI GGCC 2 cut(s) 520, 783
BspCNI CTCAG 1 cut(s) 851
BspLI GGNNCC 4 cut(s) 264, 702, 742, 892
BspMAI CTGCAG 1 cut(s) 943
BspMI ACCTGC 1 cut(s) 728
BspPI GGATC 2 cut(s) 88, 103
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 654
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 2 cut(s) 112, 515
BssMI GATC 3 cut(s) 80, 108, 171
BssNAI GTATAC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 112, 515
Bst1107I GTATAC 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 906
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 4 cut(s) 151, 226, 464, 950
Bst6I CTCTTC 2 cut(s) 296, 795
BstC8I GCNNGC 4 cut(s) 457, 574, 578, 582
BstDEI CTNAG 3 cut(s) 282, 407, 838
BstF5I GGATG 1 cut(s) 833
BstKTI GATC 3 cut(s) 83, 111, 174
BstMBI GATC 3 cut(s) 80, 108, 171
BstMWI GCNNNNNNNGC 4 cut(s) 128, 722, 731, 941
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 939
BstV1I GCAGC 6 cut(s) 439, 487, 556, 709, 746, 854
BstZ17I GTATAC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 520, 783
BtsCI GGATG 1 cut(s) 833
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 63, 834
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 4 cut(s) 457, 574, 578, 582
CaiI CAGNNNCTG 1 cut(s) 848
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 2 cut(s) 673, 890
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 2 cut(s) 340, 657
CviAII CATG 2 cut(s) 258, 374
CviQI GTAC 2 cut(s) 340, 657
DdeI CTNAG 3 cut(s) 282, 407, 838
DpnI GATC 3 cut(s) 82, 110, 173
DpnII GATC 3 cut(s) 80, 108, 171
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 2 cut(s) 296, 795
EarI CTCTTC 2 cut(s) 296, 795
EciI GGCGGA 1 cut(s) 852
Eco130I CCWWGG 2 cut(s) 112, 515
Eco147I AGGCCT 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 673, 890
Eco57I CTGAAG 2 cut(s) 819, 843
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 112, 515
ErhI CCWWGG 2 cut(s) 112, 515
FaeI CATG 2 cut(s) 261, 377
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 876
FatI CATG 2 cut(s) 257, 373
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 7 cut(s) 453, 501, 570, 723, 735, 843, 942
FokI GGATG 1 cut(s) 820
Fsp4HI GCNGC 7 cut(s) 453, 501, 570, 723, 735, 843, 942
FspBI CTAG 2 cut(s) 414, 666
GluI GCNGC 7 cut(s) 453, 501, 570, 723, 735, 843, 942
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 2 cut(s) 520, 783
HapII CCGG 2 cut(s) 167, 605
Hin1II CATG 2 cut(s) 261, 377
HinfI GANTC 3 cut(s) 47, 344, 773
HpaII CCGG 2 cut(s) 167, 605
HphI GGTGA 2 cut(s) 254, 434
Hpy166II GTNNAC 2 cut(s) 67, 340
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 67, 340
HpyAV CCTTC 3 cut(s) 55, 358, 881
HpyCH4III ACNGT 4 cut(s) 151, 226, 464, 950
HpyCH4V TGCA 6 cut(s) 368, 455, 490, 817, 935, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 722, 731, 941
HpyF3I CTNAG 3 cut(s) 282, 407, 838
Hsp92II CATG 2 cut(s) 261, 377
Kzo9I GATC 3 cut(s) 80, 108, 171
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 4 cut(s) 589, 595, 706, 769
Lsp1109I GCAGC 6 cut(s) 439, 487, 556, 709, 746, 854
LweI GCATC 3 cut(s) 235, 920, 944
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 2 cut(s) 414, 666
MaeIII GTNAC 1 cut(s) 829
MalI GATC 3 cut(s) 82, 110, 173
MboI GATC 3 cut(s) 80, 108, 171
MboII GAAGA 4 cut(s) 283, 644, 654, 812
MlsI TGGCCA 1 cut(s) 783
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 783
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 6 cut(s) 8, 89, 531, 796, 802, 847
Mox20I TGGCCA 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 783
MseI TTAA 1 cut(s) 917
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 783
MspI CCGG 2 cut(s) 167, 605
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 128, 722, 731, 941
NdeII GATC 3 cut(s) 80, 108, 171
NlaIII CATG 2 cut(s) 261, 377
NlaIV GGNNCC 4 cut(s) 264, 702, 742, 892
NmuCI GTSAC 1 cut(s) 829
PceI AGGCCT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 3 cut(s) 47, 344, 773
PkrI GCNGC 7 cut(s) 454, 502, 571, 724, 736, 844, 943
PpuMI RGGWCCY 1 cut(s) 890
Psp5II RGGWCCY 1 cut(s) 890
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 264, 702, 742, 892
PspPI GGNCC 2 cut(s) 673, 890
PspPPI RGGWCCY 1 cut(s) 890
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 848
RsaI GTAC 2 cut(s) 341, 658
RsaNI GTAC 2 cut(s) 340, 657
RseI CAYNNNNRTG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 917
SatI GCNGC 7 cut(s) 453, 501, 570, 723, 735, 843, 942
Sau3AI GATC 3 cut(s) 80, 108, 171
Sau96I GGNCC 2 cut(s) 673, 890
ScrFI CCNGG 1 cut(s) 543
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 3 cut(s) 235, 920, 944
SfcI CTRYAG 1 cut(s) 939
SinI GGWCC 2 cut(s) 673, 890
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 1 cut(s) 52
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 1 cut(s) 863
SspMI CTAG 2 cut(s) 414, 666
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 2 cut(s) 112, 515
TaaI ACNGT 4 cut(s) 151, 226, 464, 950
TaqI TCGA 2 cut(s) 13, 174
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 3 cut(s) 47, 344, 773
Tru1I TTAA 1 cut(s) 917
Tru9I TTAA 1 cut(s) 917
TscAI CASTG 2 cut(s) 63, 834
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 7 cut(s) 452, 500, 569, 722, 734, 842, 941
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 2 cut(s) 246, 283
TspRI CASTG 2 cut(s) 63, 834
VpaK11BI GGWCC 2 cut(s) 673, 890
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 414, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.