FvH4_3g00430

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000455
Physical Location & Seq
Forward (+)
231153 .. 232615
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00430.t1

Sequence Viewer

Length: 561 bp
ATGGGGGGCGAAGAAAAGATGACGATAATGGTTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAAGAAGGTTAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGAGGAGAAGAACAACCAGGTGATCATCAAGGTGGTTTGCTGCAGTCCTGAGAAGATCAGAGACAAGCTATGCTGCAAAGGAGGTGGCGCCATCAAGAGCATCGATATCAAAGAGCCCAAGCCCAAGGTAGAGAAGCCACCAGTGGCAGAAAACCAGAAGCCTGAAGAGAAGCCGAAGCCTTCTGCGCCTCCGTTTCCTGCTTACCCTCCTGTGACGGTGAGTGCGTGTTGTATTGTTTGTTACGGAGGGCATCCGGGTGGTCCCTGCCAAACTGGGTACGGTTACGGTGGGGCAGCACCATACATAGAGTACGATGGCTACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCTACGCCACTAGTAGTTGCTGCGTGACACGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGTGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

187

Amino Acids

20.41

Weight (kDa)

8.43

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 471
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 3 cut(s) 32, 56, 303
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 119, 398, 431
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 187, 483
AluI AGCT 2 cut(s) 187, 483
Alw26I GTCTC 2 cut(s) 102, 174
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 159, 192, 413, 501
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 3 cut(s) 209, 307, 551
AspS9I GGNCC 2 cut(s) 43, 380
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 151, 349
AvaII GGWCC 2 cut(s) 43, 380
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 146, 179, 425, 488
BccI CCATC 3 cut(s) 218, 428, 560
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 102, 174
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 4 cut(s) 160, 193, 414, 502
BlsI GCNGC 4 cut(s) 161, 194, 415, 503
Bme1390I CCNGG 2 cut(s) 137, 375
Bme18I GGWCC 2 cut(s) 43, 380
BmgT120I GGNCC 2 cut(s) 43, 380
BmiI GGNNCC 2 cut(s) 208, 382
BmrFI CCNGG 2 cut(s) 137, 375
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 228, 379
BmuI ACTGGG 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 260, 397
BseBI CCWGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 260, 397
BseRI GAGGAG 2 cut(s) 137, 493
BseXI GCAGC 4 cut(s) 146, 179, 425, 488
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 222
BsiSI CCGG 2 cut(s) 374, 452
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 102, 174
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 141, 174
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 208, 382
BspMAI CTGCAG 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 2 cut(s) 260, 397
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 141, 174
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 337, 401, 407
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 3 cut(s) 209, 307, 551
BstKTI GATC 2 cut(s) 144, 177
BstMAI GTCTC 2 cut(s) 102, 174
BstMBI GATC 2 cut(s) 141, 174
BstMWI GCNNNNNNNGC 2 cut(s) 304, 510
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 373
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 4 cut(s) 146, 179, 425, 488
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 451
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 56, 267, 532
CfoI GCGC 3 cut(s) 209, 307, 551
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 2 cut(s) 43, 380
ClaI ATCGAT 1 cut(s) 222
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 3 cut(s) 118, 397, 430
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 556
CviQI GTAC 3 cut(s) 118, 397, 430
DdeI CTNAG 1 cut(s) 168
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 143, 176
DpnII GATC 2 cut(s) 141, 174
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 43, 380
Eco57I CTGAAG 3 cut(s) 32, 56, 303
EcoRII CCWGG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 559
FaiI YATR 6 cut(s) 190, 421, 425, 444, 459, 557
FaqI GGGAC 1 cut(s) 366
FatI CATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 160, 193, 414, 502
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 4 cut(s) 160, 193, 414, 502
FspBI CTAG 1 cut(s) 492
GlaI GCGC 3 cut(s) 208, 306, 550
GluI GCNGC 4 cut(s) 160, 193, 414, 502
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 374, 452
HhaI GCGC 3 cut(s) 209, 307, 551
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 559
Hin6I GCGC 3 cut(s) 207, 305, 549
HinP1I GCGC 3 cut(s) 207, 305, 549
HpaII CCGG 2 cut(s) 374, 452
HphI GGTGA 2 cut(s) 151, 349
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 36, 179
Hpy188III TCNNGA 2 cut(s) 167, 214
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 5 cut(s) 31, 56, 64, 309, 441
HpyCH4III ACNGT 3 cut(s) 337, 401, 407
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 162, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 510
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 559
HspAI GCGC 3 cut(s) 207, 305, 549
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 174
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 4 cut(s) 146, 179, 425, 488
LweI GCATC 2 cut(s) 228, 379
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 5 cut(s) 331, 359, 401, 464, 505
MalI GATC 2 cut(s) 143, 176
MboI GATC 2 cut(s) 141, 174
MboII GAAGA 5 cut(s) 23, 139, 184, 296, 542
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 7 cut(s) 108, 115, 194, 318, 336, 359, 471
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 149, 375
MspI CCGG 2 cut(s) 374, 452
MspR9I CCNGG 2 cut(s) 137, 375
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 304, 510
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 1 cut(s) 375
NdeII GATC 2 cut(s) 141, 174
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 2 cut(s) 208, 382
NmuCI GTSAC 2 cut(s) 331, 505
PcsI WCGNNNNNNNCGW 1 cut(s) 341
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 4 cut(s) 161, 194, 415, 503
PluTI GGCGCC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 208, 382
PspPI GGNCC 2 cut(s) 43, 380
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 3 cut(s) 119, 398, 431
RsaNI GTAC 3 cut(s) 118, 397, 430
RseI CAYNNNNRTG 2 cut(s) 149, 375
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 160, 193, 414, 502
Sau3AI GATC 2 cut(s) 141, 174
Sau96I GGNCC 2 cut(s) 43, 380
ScrFI CCNGG 2 cut(s) 137, 375
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 2 cut(s) 228, 379
SfcI CTRYAG 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 2 cut(s) 43, 380
SmiMI CAYNNNNRTG 2 cut(s) 149, 375
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 471
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 135, 373
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 337, 401, 407
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 56, 267, 532
TseFI GTSAC 2 cut(s) 331, 505
TseI GCWGC 4 cut(s) 159, 192, 413, 501
Tsp45I GTSAC 2 cut(s) 331, 505
TspGWI ACGGA 2 cut(s) 300, 378
TspRI CASTG 3 cut(s) 56, 267, 532
VpaK11BI GGWCC 2 cut(s) 43, 380
XapI RAATTY 1 cut(s) 92
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.