Rroxscaffold_4G00307920

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000455
Physical Location & Seq
Forward (+)
29387860 .. 29393037
5178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307920.1

Sequence Viewer

Length: 738 bp
ATGTTTCTTTACAAGAAACTCAGAGCCCAGATGTCCCAAGACTTGAAAACCCTCTTAGCCCAGATGGCAATTCCGAGTCTTCTCCCGAATGCTATATTTGGTTCAATCCCAGCAGCCCTAGAGCTTCACAGCTCAGGAAGAAATCCTACGATTCCAGGTGACTATAATGATTCTGAAGAAATACGAGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGTAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTCCACCGGCGCCGAAACCCGCTCCGGCTCCACCTCCGGCTCCGAAACCTGCTCCGGCTCCACCTCCGGCGCCGAAACCAGCTCCAGCTCCGGAGCCAAAACCTGCTCCGTGTCCTCCTTGCTGTCCGCGGCCGTGTTGTATGGATTGTTACTATGGGCGTCCCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAAGCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTACTGCGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

245

Amino Acids

26.57

Weight (kDa)

8.36

Isoelectric Point (pI)

70.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 388, 442
AccB1I GGYRCC 3 cut(s) 284, 340, 400
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 5 cut(s) 351, 458, 460, 663, 688
AcoI YGGCCR 2 cut(s) 461, 524
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 5 cut(s) 285, 341, 401, 490, 562
AfaI GTAC 2 cut(s) 197, 623
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 2 cut(s) 46, 105
AjnI CCWGG 3 cut(s) 154, 213, 565
AluBI AGCT 6 cut(s) 124, 132, 265, 413, 419, 675
AluI AGCT 6 cut(s) 124, 132, 265, 413, 419, 675
Alw26I GTCTC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 4 cut(s) 461, 524, 602, 641
ApeKI GCWGC 2 cut(s) 113, 237
AspLEI GCGC 4 cut(s) 287, 343, 403, 728
AspS9I GGNCC 1 cut(s) 572
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 170, 229, 541
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 572
BanI GGYRCC 3 cut(s) 284, 340, 400
BanII GRGCYC 2 cut(s) 28, 315
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 125, 224
BccI CCATC 3 cut(s) 58, 620, 737
BceAI ACGGC 3 cut(s) 448, 520, 676
BciT130I CCWGG 3 cut(s) 156, 215, 567
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 238
BfoI RGCGCY 3 cut(s) 288, 344, 404
BfuAI ACCTGC 2 cut(s) 388, 442
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 3 cut(s) 114, 238, 461
BlsI GCNGC 3 cut(s) 115, 239, 462
Bme1390I CCNGG 4 cut(s) 156, 215, 497, 567
Bme18I GGWCC 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 572
BmrFI CCNGG 4 cut(s) 156, 215, 497, 567
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 5 cut(s) 285, 341, 401, 490, 562
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 458, 495, 521
BsaWI WCCGGW 2 cut(s) 421, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 3 cut(s) 337, 526, 643
Bse1I ACTGG 1 cut(s) 589
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 3 cut(s) 156, 215, 567
BseDI CCNNGG 3 cut(s) 458, 495, 521
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 34, 147
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 321, 685
BseX3I CGGCCG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 125, 224
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 460
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 4 cut(s) 463, 526, 604, 643
BshNI GGYRCC 3 cut(s) 284, 340, 400
BsiEI CGRYCG 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 314
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 4 cut(s) 19, 272, 477, 558
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 4 cut(s) 19, 272, 477, 558
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 4 cut(s) 463, 526, 604, 643
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 28, 315
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 3 cut(s) 219, 252, 303
BspACI CCGC 5 cut(s) 351, 458, 460, 663, 688
BspANI GGCC 4 cut(s) 463, 526, 604, 643
BspCNI CTCAG 2 cut(s) 33, 146
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 460
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 2 cut(s) 388, 442
BspT107I GGYRCC 3 cut(s) 284, 340, 400
BspTNI GGTCTC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 353
BsrFI RCCGGY 3 cut(s) 337, 526, 643
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 3 cut(s) 337, 526, 643
BssECI CCNNGG 3 cut(s) 458, 495, 521
BssMI GATC 3 cut(s) 219, 252, 303
BssNI GRCGYC 5 cut(s) 285, 341, 401, 490, 562
Bst2UI CCWGG 3 cut(s) 156, 215, 567
Bst4CI ACNGT 2 cut(s) 599, 621
BstACI GRCGYC 5 cut(s) 285, 341, 401, 490, 562
BstC8I GCNNGC 3 cut(s) 514, 606, 724
BstDEI CTNAG 3 cut(s) 20, 55, 133
BstDSI CCRYGG 2 cut(s) 458, 521
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 3 cut(s) 288, 344, 404
BstHHI GCGC 4 cut(s) 287, 343, 403, 728
BstKTI GATC 3 cut(s) 222, 255, 306
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 219, 252, 303
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 4 cut(s) 65, 319, 532, 687
BstNI CCWGG 3 cut(s) 156, 215, 567
BstSCI CCNGG 4 cut(s) 154, 213, 495, 565
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 125, 224
BstV2I GAAGAC 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 461
BsuRI GGCC 4 cut(s) 463, 526, 604, 643
BtgI CCRYGG 2 cut(s) 458, 521
BveI ACCTGC 2 cut(s) 388, 442
Cac8I GCNNGC 3 cut(s) 514, 606, 724
CfoI GCGC 4 cut(s) 287, 343, 403, 728
Cfr10I RCCGGY 3 cut(s) 337, 526, 643
Cfr13I GGNCC 1 cut(s) 572
Cfr42I CCGCGG 1 cut(s) 461
CseI GACGC 2 cut(s) 479, 551
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 196, 622
CviAII CATG 1 cut(s) 733
CviQI GTAC 2 cut(s) 196, 622
DdeI CTNAG 3 cut(s) 20, 55, 133
DinI GGCGCC 3 cut(s) 286, 342, 402
DpnI GATC 3 cut(s) 221, 254, 305
DpnII GATC 3 cut(s) 219, 252, 303
EaeI YGGCCR 2 cut(s) 461, 524
EagI CGGCCG 1 cut(s) 461
EclXI CGGCCG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 604
Eco24I GRGCYC 2 cut(s) 28, 315
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 572
Eco52I CGGCCG 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 314
EcoRII CCWGG 3 cut(s) 154, 213, 565
EcoT38I GRGCYC 2 cut(s) 28, 315
EgeI GGCGCC 3 cut(s) 286, 342, 402
EheI GGCGCC 3 cut(s) 286, 342, 402
FaeI CATG 1 cut(s) 736
FaqI GGGAC 4 cut(s) 19, 272, 477, 558
FatI CATG 1 cut(s) 732
FauI CCCGC 2 cut(s) 358, 695
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 114, 238, 461
FriOI GRGCYC 2 cut(s) 28, 315
Fsp4HI GCNGC 3 cut(s) 114, 238, 461
FspBI CTAG 1 cut(s) 119
GlaI GCGC 4 cut(s) 286, 342, 402, 727
GluI GCNGC 3 cut(s) 114, 238, 461
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 3 cut(s) 288, 344, 404
HaeIII GGCC 4 cut(s) 463, 526, 604, 643
HgaI GACGC 2 cut(s) 479, 551
HhaI GCGC 4 cut(s) 287, 343, 403, 728
Hin1I GRCGYC 5 cut(s) 285, 341, 401, 490, 562
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 4 cut(s) 285, 341, 401, 726
HinP1I GCGC 4 cut(s) 285, 341, 401, 726
HinfI GANTC 3 cut(s) 76, 151, 170
HphI GGTGA 3 cut(s) 170, 229, 541
Hpy188I TCNGA 5 cut(s) 23, 75, 175, 375, 704
Hpy188III TCNNGA 5 cut(s) 85, 135, 245, 301, 422
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 551, 633
HpyCH4III ACNGT 2 cut(s) 599, 621
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 319, 532, 687
HpyF3I CTNAG 3 cut(s) 20, 55, 133
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 5 cut(s) 285, 341, 401, 490, 562
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 4 cut(s) 285, 341, 401, 726
KasI GGCGCC 3 cut(s) 284, 340, 400
Kpn2I TCCGGA 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 219
KspI CCGCGG 1 cut(s) 461
Kzo9I GATC 3 cut(s) 219, 252, 303
Lsp1109I GCAGC 2 cut(s) 125, 224
LweI GCATC 1 cut(s) 306
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 6 cut(s) 158, 479, 551, 593, 656, 682
MalI GATC 3 cut(s) 221, 254, 305
MbiI CCGCTC 1 cut(s) 353
MboI GATC 3 cut(s) 219, 252, 303
MboII GAAGA 5 cut(s) 71, 150, 188, 217, 719
MhlI GDGCHC 2 cut(s) 28, 315
MluCI AATT 1 cut(s) 69
Mly113I GGCGCC 3 cut(s) 285, 341, 401
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 9 cut(s) 62, 272, 339, 342, 375, 405, 456, 528, 663
MroI TCCGGA 1 cut(s) 421
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 460
MspR9I CCNGG 4 cut(s) 156, 215, 497, 567
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 3 cut(s) 156, 215, 567
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 65, 319, 532, 687
NarI GGCGCC 3 cut(s) 285, 341, 401
NciI CCSGG 1 cut(s) 497
NdeII GATC 3 cut(s) 219, 252, 303
NlaIII CATG 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 158, 682
PceI AGGCCT 1 cut(s) 604
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 151, 170
Pfl23II CGTACG 1 cut(s) 195
PkrI GCNGC 3 cut(s) 115, 239, 462
PleI GAGTC 1 cut(s) 84
PluTI GGCGCC 3 cut(s) 288, 344, 404
PpsI GAGTC 1 cut(s) 84
Psp6I CCWGG 3 cut(s) 154, 213, 565
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 3 cut(s) 154, 213, 565
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 242
RsaI GTAC 2 cut(s) 197, 623
RsaNI GTAC 2 cut(s) 196, 622
RseI CAYNNNNRTG 1 cut(s) 227
SacII CCGCGG 1 cut(s) 461
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 114, 238, 461
Sau3AI GATC 3 cut(s) 219, 252, 303
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 156, 215, 497, 567
SduI GDGCHC 2 cut(s) 28, 315
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 238
SfoI GGCGCC 3 cut(s) 286, 342, 402
Sfr303I CCGCGG 1 cut(s) 461
SgrAI CRCCGGYG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 461
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 5 cut(s) 351, 458, 460, 663, 688
SspDI GGCGCC 3 cut(s) 284, 340, 400
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 4 cut(s) 154, 213, 495, 565
TaaI ACNGT 2 cut(s) 599, 621
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 69
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 2 cut(s) 151, 170
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 2 cut(s) 158, 682
TseI GCWGC 2 cut(s) 113, 237
Tsp45I GTSAC 2 cut(s) 158, 682
TspGWI ACGGA 2 cut(s) 429, 510
VpaK11BI GGWCC 1 cut(s) 572
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.