Rh5DG005500

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000455
Physical Location & Seq
Forward (+)
365375 .. 366562
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG005500.1

Sequence Viewer

Length: 681 bp
ATGGGGGAAAAGGAAAAGGTGACGATAATGATTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCCAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTACAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCCGAGAAGCCCAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAAAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCCAAAGAGCCCGAGAAACCTAAAGAGAAACCCAAAGAGCCCGAGAAGCCGAAGGAAGCTCCACCTGCGGTGATCGTTAACCCGTGTTGTATGGAATGTTACGGAGGGCATCCTGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGACCTGCCCCTTACATAGAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAACTATACTACGAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

226

Amino Acids

25.68

Weight (kDa)

8.78

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 2 cut(s) 457, 544
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 3 cut(s) 452, 594, 631
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 119, 554
AjnI CCWGG 2 cut(s) 135, 496
AluBI AGCT 2 cut(s) 187, 443
AluI AGCT 2 cut(s) 187, 443
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 3 cut(s) 236, 395, 425
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 209, 671
AspS9I GGNCC 3 cut(s) 43, 503, 533
AsuHPI GGTGA 3 cut(s) 31, 151, 466
AvaI CYCGRG 3 cut(s) 236, 395, 425
AvaII GGWCC 3 cut(s) 43, 503, 533
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 396, 426
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 551, 680
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 2 cut(s) 137, 498
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 2 cut(s) 457, 544
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 137, 498
Bme18I GGWCC 3 cut(s) 43, 503, 533
BmeT110I CYCGRG 3 cut(s) 236, 395, 425
BmgT120I GGNCC 3 cut(s) 43, 503, 533
BmiI GGNNCC 6 cut(s) 208, 273, 303, 333, 363, 505
BmrFI CCNGG 2 cut(s) 137, 498
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 228, 502
BmuI ACTGGG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 137, 498
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 144, 493
BseNI ACTGG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 3 cut(s) 236, 395, 425
BsiSI CCGG 5 cut(s) 275, 305, 335, 365, 575
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 194, 489
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 194, 489
BsnI GGCC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 3 cut(s) 236, 395, 425
Bsp1286I GDGCHC 3 cut(s) 237, 396, 426
Bsp143I GATC 5 cut(s) 141, 174, 225, 256, 456
BspACI CCGC 3 cut(s) 452, 594, 631
BspANI GGCC 1 cut(s) 574
BspLI GGNNCC 6 cut(s) 208, 273, 303, 333, 363, 505
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 2 cut(s) 457, 544
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 574
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 5 cut(s) 141, 174, 225, 256, 456
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 137, 498
Bst4CI ACNGT 1 cut(s) 530
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 667
BstF5I GGATG 2 cut(s) 144, 493
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 671
BstKTI GATC 5 cut(s) 144, 177, 228, 259, 459
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 141, 174, 225, 256, 456
BstMWI GCNNNNNNNGC 9 cut(s) 241, 280, 310, 340, 349, 370, 430, 449, 630
BstNI CCWGG 2 cut(s) 137, 498
BstSCI CCNGG 2 cut(s) 135, 496
BstSFI CTRYAG 2 cut(s) 64, 160
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 574
BtsCI GGATG 2 cut(s) 144, 493
BtsIMutI CAGTG 2 cut(s) 56, 652
BveI ACCTGC 2 cut(s) 457, 544
Cac8I GCNNGC 1 cut(s) 667
CfoI GCGC 2 cut(s) 209, 671
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 3 cut(s) 43, 503, 533
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 118, 553
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 676
CviQI GTAC 2 cut(s) 118, 553
DinI GGCGCC 1 cut(s) 208
DpnI GATC 5 cut(s) 143, 176, 227, 258, 458
DpnII GATC 5 cut(s) 141, 174, 225, 256, 456
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 396, 426
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 43, 503, 533
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 3 cut(s) 236, 395, 425
EcoRII CCWGG 2 cut(s) 135, 496
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 396, 426
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 679
FaiI YATR 8 cut(s) 190, 476, 522, 548, 567, 582, 609, 677
FaqI GGGAC 2 cut(s) 194, 489
FatI CATG 1 cut(s) 675
FauI CCCGC 1 cut(s) 638
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 131, 480
FriOI GRGCYC 2 cut(s) 396, 426
Fsp4HI GCNGC 1 cut(s) 160
GlaI GCGC 2 cut(s) 208, 670
GluI GCNGC 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 574
HapII CCGG 5 cut(s) 275, 305, 335, 365, 575
HhaI GCGC 2 cut(s) 209, 671
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 679
Hin6I GCGC 2 cut(s) 207, 669
HinP1I GCGC 2 cut(s) 207, 669
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 5 cut(s) 275, 305, 335, 365, 575
HphI GGTGA 3 cut(s) 31, 151, 466
Hpy166II GTNNAC 3 cut(s) 43, 463, 533
Hpy188I TCNGA 2 cut(s) 36, 261
Hpy188III TCNNGA 3 cut(s) 76, 167, 223
Hpy8I GTNNAC 3 cut(s) 43, 463, 533
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 31, 56, 64, 430, 564
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 280, 310, 340, 349, 370, 430, 449, 630
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 679
HspAI GCGC 2 cut(s) 207, 669
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 5 cut(s) 141, 174, 225, 256, 456
LmnI GCTCC 5 cut(s) 271, 301, 331, 361, 448
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 228, 502
MabI ACCWGGT 1 cut(s) 135
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 6 cut(s) 19, 482, 524, 587, 617, 625
MalI GATC 5 cut(s) 143, 176, 227, 258, 458
MboI GATC 5 cut(s) 141, 174, 225, 256, 456
MboII GAAGA 2 cut(s) 139, 662
MhlI GDGCHC 3 cut(s) 237, 396, 426
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 4 cut(s) 108, 194, 482, 594
MseI TTAA 2 cut(s) 213, 462
MslI CAYNNNNRTG 2 cut(s) 149, 498
MspI CCGG 5 cut(s) 275, 305, 335, 365, 575
MspR9I CCNGG 2 cut(s) 137, 498
MvaI CCWGG 2 cut(s) 137, 498
MwoI GCNNNNNNNGC 9 cut(s) 241, 280, 310, 340, 349, 370, 430, 449, 630
NarI GGCGCC 1 cut(s) 207
NdeII GATC 5 cut(s) 141, 174, 225, 256, 456
NlaIII CATG 1 cut(s) 679
NlaIV GGNNCC 6 cut(s) 208, 273, 303, 333, 363, 505
NmuCI GTSAC 2 cut(s) 19, 625
PaqCI CACCTGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 135, 496
PspGI CCWGG 2 cut(s) 135, 496
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 6 cut(s) 208, 273, 303, 333, 363, 505
PspPI GGNCC 3 cut(s) 43, 503, 533
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 2 cut(s) 119, 554
RsaNI GTAC 2 cut(s) 118, 553
RseI CAYNNNNRTG 2 cut(s) 149, 498
SaqAI TTAA 2 cut(s) 213, 462
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 5 cut(s) 141, 174, 225, 256, 456
Sau96I GGNCC 3 cut(s) 43, 503, 533
ScrFI CCNGG 2 cut(s) 137, 498
SduI GDGCHC 3 cut(s) 237, 396, 426
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 2 cut(s) 228, 502
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 3 cut(s) 43, 503, 533
SmiMI CAYNNNNRTG 2 cut(s) 149, 498
Sse9I AATT 1 cut(s) 92
SsiI CCGC 3 cut(s) 452, 594, 631
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 135, 496
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 213, 462
Tru9I TTAA 2 cut(s) 213, 462
TscAI CASTG 2 cut(s) 56, 652
TseFI GTSAC 2 cut(s) 19, 625
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 2 cut(s) 19, 625
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 56, 652
VpaK11BI GGWCC 3 cut(s) 43, 503, 533
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.