pycom05g32730

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000455
Physical Location & Seq
Reverse (-)
32011196 .. 32012493
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32730.1

Sequence Viewer

Length: 756 bp
ATGGGGGAAAAGGAAAAGGTTACGACTATGGTGCTGAAGGTGGATCTTGGGTGTCACAAATGCTATAAGAAGGTCAAAAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGATATACGACGAGAAGGAAAACCGAGTGGTGATCAATCCAGTGGTATGCTGTAGTCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTGGAGGTGCCATAAAAAGCATCGAGATCAAAGAGCCAGAGAAGCCCAAGCCACCGCCGGCTGAGAAACCCAAAGAGCCCGAAAAACCTAAACCGGCTGAAAAACCCAAAGAGCCCGAAAAACCTAAACCGGCTGCGAAACCCAAAGAGCCCGAAAAACCTAATCCGCCTGAAAAACCCAAAGACCCCGAAAAACCTAAACCGGCAGAGAAACCCAAAGAGCCCGAAAAACCTAAACCGGTAGAGAAACCCAAGGAACCTGAAAAACCTAAATCTGCACCGCCACCGGCGGAGCCAGTGAAGCCTTCTCCTCCTGTTGTGCCAGGGTACCCACCGCCTGTCCAAGTAAACGCGTGTTGTATGGATTGTTACCAGGGGCATCCAGGTGGGCCATGCTACAGTGGTTATGGCGGTGGGCCTGCCCCATACATACAATATGATGGTTACTATGGAAGGCCTGTGTATGACAGTTACGGCGGGGGCAACAGGAGCTATTGTGTTACCCGCCCTGACTGTTTCAGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

8.89

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 209, 528
AccII CGCG 1 cut(s) 554
AciI CCGC 8 cut(s) 257, 368, 482, 491, 536, 612, 678, 706
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 552
AgeI ACCGGT 1 cut(s) 439
AjnI CCWGG 3 cut(s) 523, 573, 583
AluBI AGCT 2 cut(s) 693, 740
AluI AGCT 2 cut(s) 693, 740
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 51
AoxI GGCC 3 cut(s) 590, 617, 656
ApeKI GCWGC 2 cut(s) 195, 335
ApoI RAATTY 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 439
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 590, 617
AsuHPI GGTGA 1 cut(s) 154
BanI GGYRCC 2 cut(s) 209, 528
BanII GRGCYC 4 cut(s) 282, 318, 354, 426
BbvCI CCTCAGC 1 cut(s) 736
BbvI GCAGC 2 cut(s) 182, 322
BccI CCATC 1 cut(s) 635
BceAI ACGGC 1 cut(s) 691
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 3 cut(s) 525, 575, 585
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 2 cut(s) 163, 598
BisI GCNGC 2 cut(s) 196, 336
BlsI GCNGC 2 cut(s) 197, 337
Bme1390I CCNGG 3 cut(s) 525, 575, 585
BmgT120I GGNCC 2 cut(s) 590, 617
BmiI GGNNCC 4 cut(s) 211, 459, 495, 530
BmrFI CCNGG 3 cut(s) 525, 575, 585
BmsI GCATC 2 cut(s) 231, 589
Bpu10I CCTNAGC 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 453, 524, 574
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bse118I RCCGGY 6 cut(s) 259, 295, 331, 403, 439, 487
Bse1I ACTGG 2 cut(s) 152, 497
BseBI CCWGG 3 cut(s) 525, 575, 585
BseDI CCNNGG 3 cut(s) 453, 524, 574
BseGI GGATG 1 cut(s) 580
BseMII CTCAG 2 cut(s) 255, 750
BseNI ACTGG 2 cut(s) 152, 497
BseRI GAGGAG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 182, 322
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 3 cut(s) 592, 619, 658
BshNI GGYRCC 2 cut(s) 209, 528
BshTI ACCGGT 1 cut(s) 439
BsiSI CCGG 6 cut(s) 260, 296, 332, 404, 440, 488
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 3 cut(s) 592, 619, 658
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 4 cut(s) 282, 318, 354, 426
Bsp143I GATC 3 cut(s) 43, 144, 228
BspACI CCGC 8 cut(s) 257, 368, 482, 491, 536, 612, 678, 706
BspANI GGCC 3 cut(s) 592, 619, 658
BspCNI CTCAG 2 cut(s) 256, 749
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 4 cut(s) 211, 459, 495, 530
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 209, 528
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 6 cut(s) 259, 295, 331, 403, 439, 487
BsrI ACTGG 2 cut(s) 152, 497
BssAI RCCGGY 6 cut(s) 259, 295, 331, 403, 439, 487
BssECI CCNNGG 3 cut(s) 453, 524, 574
BssMI GATC 3 cut(s) 43, 144, 228
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 525, 575, 585
Bst4CI ACNGT 4 cut(s) 602, 671, 716, 748
BstC8I GCNNGC 3 cut(s) 261, 621, 742
BstDEI CTNAG 2 cut(s) 264, 736
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 3 cut(s) 46, 147, 231
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 43, 144, 228
BstMWI GCNNNNNNNGC 3 cut(s) 244, 502, 690
BstNI CCWGG 3 cut(s) 525, 575, 585
BstSCI CCNGG 3 cut(s) 523, 573, 583
BstSFI CTRYAG 2 cut(s) 163, 598
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 2 cut(s) 182, 322
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 3 cut(s) 592, 619, 658
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 4 cut(s) 159, 504, 607, 727
Cac8I GCNNGC 3 cut(s) 261, 621, 742
Cfr10I RCCGGY 6 cut(s) 259, 295, 331, 403, 439, 487
Cfr13I GGNCC 2 cut(s) 590, 617
Csp6I GTAC 1 cut(s) 529
CspAI ACCGGT 1 cut(s) 439
CviAII CATG 2 cut(s) 594, 751
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 264, 736
DpnI GATC 3 cut(s) 45, 146, 230
DpnII GATC 3 cut(s) 43, 144, 228
EciI GGCGGA 2 cut(s) 357, 506
Eco130I CCWWGG 1 cut(s) 453
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 4 cut(s) 282, 318, 354, 426
Eco31I GGTCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 56
EcoRII CCWGG 3 cut(s) 523, 573, 583
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 4 cut(s) 282, 318, 354, 426
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 597, 754
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 593, 750
FauI CCCGC 2 cut(s) 671, 713
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 196, 336
FokI GGATG 1 cut(s) 567
FriOI GRGCYC 4 cut(s) 282, 318, 354, 426
Fsp4HI GCNGC 2 cut(s) 196, 336
GluI GCNGC 2 cut(s) 196, 336
HaeIII GGCC 3 cut(s) 592, 619, 658
HapII CCGG 6 cut(s) 260, 296, 332, 404, 440, 488
Hin1II CATG 2 cut(s) 597, 754
HpaII CCGG 6 cut(s) 260, 296, 332, 404, 440, 488
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 550
Hpy188III TCNNGA 2 cut(s) 170, 226
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 31, 64, 121, 516, 648
HpyCH4III ACNGT 4 cut(s) 602, 671, 716, 748
HpyCH4V TGCA 3 cut(s) 198, 479, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 502, 690
HpyF3I CTNAG 2 cut(s) 264, 736
Hsp92II CATG 2 cut(s) 597, 754
KpnI GGTACC 1 cut(s) 532
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 43, 144, 228
LmnI GCTCC 2 cut(s) 493, 690
Lsp1109I GCAGC 2 cut(s) 182, 322
LweI GCATC 2 cut(s) 231, 589
MaeIII GTNAC 6 cut(s) 19, 53, 569, 644, 671, 700
MalI GATC 3 cut(s) 45, 146, 230
MboI GATC 3 cut(s) 43, 144, 228
MboII GAAGA 1 cut(s) 737
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 4 cut(s) 282, 318, 354, 426
MluCI AATT 1 cut(s) 92
MluI ACGCGT 1 cut(s) 552
MnlI CCTC 4 cut(s) 108, 200, 522, 745
MroNI GCCGGC 1 cut(s) 259
MslI CAYNNNNRTG 2 cut(s) 585, 749
MspI CCGG 6 cut(s) 260, 296, 332, 404, 440, 488
MspR9I CCNGG 3 cut(s) 525, 575, 585
MvaI CCWGG 3 cut(s) 525, 575, 585
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 244, 502, 690
NaeI GCCGGC 1 cut(s) 261
NdeII GATC 3 cut(s) 43, 144, 228
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 597, 754
NlaIV GGNNCC 4 cut(s) 211, 459, 495, 530
NmuCI GTSAC 1 cut(s) 53
PceI AGGCCT 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 261
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 2 cut(s) 197, 337
Psp6I CCWGG 3 cut(s) 523, 573, 583
PspGI CCWGG 3 cut(s) 523, 573, 583
PspN4I GGNNCC 4 cut(s) 211, 459, 495, 530
PspPI GGNCC 2 cut(s) 590, 617
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 2 cut(s) 585, 749
SatI GCNGC 2 cut(s) 196, 336
Sau3AI GATC 3 cut(s) 43, 144, 228
Sau96I GGNCC 2 cut(s) 590, 617
ScrFI CCNGG 3 cut(s) 525, 575, 585
SduI GDGCHC 4 cut(s) 282, 318, 354, 426
SfaNI GCATC 2 cut(s) 231, 589
SfcI CTRYAG 2 cut(s) 163, 598
SgrAI CRCCGGYG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 585, 749
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 8 cut(s) 257, 368, 482, 491, 536, 612, 678, 706
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 3 cut(s) 523, 573, 583
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 4 cut(s) 602, 671, 716, 748
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 92
TscAI CASTG 4 cut(s) 159, 504, 607, 727
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 195, 335
Tsp45I GTSAC 1 cut(s) 53
TspRI CASTG 4 cut(s) 159, 504, 607, 727
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.