RchiOBHm_Chr1g0347351

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000455
Physical Location & Seq
Reverse (-)
39986483 .. 39987844
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57347

Sequence Viewer

Length: 543 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGAGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAAGAGAAACCAAAGGAAGATAAACCACCCAAAGAAGGCGAGAAGCCGAAGGTTGAGTCGGAGTCGAAGCCGAAGCCGAAGAACCCGTGTTGTATGGAATGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTGGGCCTGCCCCTTACATACAGTATGATGGCTACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCTACACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

180

Amino Acids

20.22

Weight (kDa)

8.65

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 2 cut(s) 456, 493
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 2 cut(s) 204, 355
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 2 cut(s) 132, 358
AluBI AGCT 2 cut(s) 184, 468
AluI AGCT 2 cut(s) 184, 468
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 395, 434
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 2 cut(s) 206, 533
AspS9I GGNCC 2 cut(s) 365, 395
AsuHPI GGTGA 2 cut(s) 28, 148
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 413, 542
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 134, 360
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 2 cut(s) 61, 157
BfoI RGCGCY 1 cut(s) 207
BglII AGATCT 1 cut(s) 40
BisI GCNGC 2 cut(s) 157, 190
BlsI GCNGC 2 cut(s) 158, 191
Bme1390I CCNGG 2 cut(s) 134, 360
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 365, 395
BmiI GGNNCC 2 cut(s) 205, 367
BmrFI CCNGG 2 cut(s) 134, 360
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 387
BsaHI GRCGYC 2 cut(s) 204, 355
BsaI GGTCTC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 2 cut(s) 134, 360
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 2 cut(s) 143, 176
BshFI GGCC 2 cut(s) 397, 436
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 437
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 191, 351
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 191, 351
BsnI GGCC 2 cut(s) 397, 436
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 40, 138, 171, 222
BspACI CCGC 2 cut(s) 456, 493
BspANI GGCC 2 cut(s) 397, 436
BspLI GGNNCC 2 cut(s) 205, 367
BspMAI CTGCAG 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 436
BssMI GATC 4 cut(s) 40, 138, 171, 222
BssNI GRCGYC 2 cut(s) 204, 355
Bst2UI CCWGG 2 cut(s) 134, 360
Bst4CI ACNGT 2 cut(s) 392, 414
BstACI GRCGYC 2 cut(s) 204, 355
BstC8I GCNNGC 2 cut(s) 399, 529
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 533
BstKTI GATC 4 cut(s) 43, 141, 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 4 cut(s) 40, 138, 171, 222
BstMWI GCNNNNNNNGC 2 cut(s) 238, 492
BstNI CCWGG 2 cut(s) 134, 360
BstSCI CCNGG 2 cut(s) 132, 358
BstSFI CTRYAG 2 cut(s) 61, 157
BstV1I GCAGC 2 cut(s) 143, 176
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 2 cut(s) 397, 436
BtsIMutI CAGTG 2 cut(s) 53, 514
Cac8I GCNNGC 2 cut(s) 399, 529
CfoI GCGC 2 cut(s) 206, 533
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 365, 395
CseI GACGC 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 538
CviQI GTAC 1 cut(s) 115
DinI GGCGCC 1 cut(s) 205
DpnI GATC 4 cut(s) 42, 140, 173, 224
DpnII GATC 4 cut(s) 40, 138, 171, 222
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 132, 358
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
FaeI CATG 1 cut(s) 541
FaiI YATR 9 cut(s) 23, 187, 338, 384, 410, 417, 429, 444, 539
FaqI GGGAC 2 cut(s) 191, 351
FatI CATG 1 cut(s) 537
FauI CCCGC 1 cut(s) 500
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 157, 190
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 157, 190
FspBI CTAG 1 cut(s) 477
GlaI GCGC 2 cut(s) 205, 532
GluI GCNGC 2 cut(s) 157, 190
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 2 cut(s) 397, 436
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 206, 533
Hin1I GRCGYC 2 cut(s) 204, 355
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 2 cut(s) 204, 531
HinP1I GCGC 2 cut(s) 204, 531
HinfI GANTC 3 cut(s) 28, 299, 305
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 28, 148
Hpy188I TCNGA 2 cut(s) 33, 304
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 7, 28, 61, 272, 286, 426
HpyCH4III ACNGT 2 cut(s) 392, 414
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 492
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 2 cut(s) 204, 355
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 2 cut(s) 204, 531
KasI GGCGCC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 40, 138, 171, 222
LmnI GCTCC 1 cut(s) 465
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 6 cut(s) 16, 344, 386, 449, 479, 487
MalI GATC 4 cut(s) 42, 140, 173, 224
MboI GATC 4 cut(s) 40, 138, 171, 222
MboII GAAGA 5 cut(s) 35, 136, 272, 334, 524
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 2 cut(s) 308, 314
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 191, 344, 456
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 134, 360
MvaI CCWGG 2 cut(s) 134, 360
MwoI GCNNNNNNNGC 2 cut(s) 238, 492
NarI GGCGCC 1 cut(s) 204
NdeII GATC 4 cut(s) 40, 138, 171, 222
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 2 cut(s) 205, 367
NmuCI GTSAC 2 cut(s) 16, 487
PfeI GAWTC 1 cut(s) 28
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 158, 191
PleI GAGTC 2 cut(s) 307, 313
PluTI GGCGCC 1 cut(s) 207
PpsI GAGTC 2 cut(s) 307, 313
Psp6I CCWGG 2 cut(s) 132, 358
PspGI CCWGG 2 cut(s) 132, 358
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 205, 367
PspPI GGNCC 2 cut(s) 365, 395
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 157, 190
Sau3AI GATC 4 cut(s) 40, 138, 171, 222
Sau96I GGNCC 2 cut(s) 365, 395
SchI GAGTC 2 cut(s) 308, 314
ScrFI CCNGG 2 cut(s) 134, 360
SduI GDGCHC 1 cut(s) 234
SetI ASST 9 cut(s) 18, 39, 72, 116, 138, 186, 202, 297, 470
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
SfoI GGCGCC 1 cut(s) 205
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 456, 493
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 132, 358
TaaI ACNGT 2 cut(s) 392, 414
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 219, 308
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 53, 514
TseFI GTSAC 2 cut(s) 16, 487
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 487
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 2 cut(s) 53, 514
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.