Rorug01G0186000

leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
25779700 .. 25782130
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0186000.1

Sequence Viewer

Length: 1227 bp
ATGGATCTCGATCATTCAAAGAAGGGAAAGTCCAAAAAGAAAGAAGCTGAATCAACTGGGGGCCTAAAGTTGCTGAAGCGGCATGCGGTGACTAAGTCATGCATTACAAGCCGCAAGAGTCGTAAAGTGAAGAAGGTTGTTTTATTTAACAGAAAAGAGACCCCTTGTGGGAAGGTGGCTAAGGAAATGCAAAGCTACATTGGTGTATTGGCAAGAAGGAAGGTACCGGTAATAAGGGAAAATTGGAAAGCCGCAACTCCTGAAAAGAAGAACAAAATCTGGCAACGTGTTCAGGAAAAACGTCGTGAGCAACAAGAGAGGCGCAGCAAGAATAAGTATCCTCATAGAATGTCCCGTAAGGGATATGTAGGGTTGGAGGCTGAGTTGACAAACTTGAAAAGAAAGGTTGACAGTGGAGAACTAAGCGCTGAAGGAAGTAATGATGTCTTAACATTGGTGTTGGGGACTCCGGAGCATGGGGGAAGAGTGCGGGGAGTAGGAGGTTTTGTTACTCCCTCTACTTACTTCCACCTCCCTAAACGTAGAAAGGAGAGCATAGAAGCTACTGTCAGACTTAGTGTGCAGAAAATATTGTTAGAGGAGAGAGAGAAGATAGTAGAGGAGGCAAGGGAGAAGATACTAGAGGAGGCAAGGGAGGAGATAATCAAGGAAGCGAGGGAAAAAATTGTTGCAGATGAGCGGGCTATGTGGGAGGCCAAGTTTGCTGAACTTGAAGCAAAGATAAATGGAAAAGAGGCTGCAACCATTCACCCAAATGTATCTGGCCATGGAAGTTGCTCAATGACAGTTGATGAGATTGCTCAAGAAACGGATAAAGCTCCGTTGGAAGAAGTAGTGAACAATGTGGATGGAACTAAAATTCTGAGCGTTTTTGAAGCAATGGAAAACAAAACCATCATGCGTAAAAGGAAAGGGACAAAGGTTGTTAAGGAAGGCAGGTTGGATAAAAGTCCAGGCTGCAAGAAAGGTAATGAGTATCCCAAGTTGCTTGAGAAAGTAGTTGTCAACCGTGAGGAGGTCAATGAGGCTGTTGAAGAAAATGTCAATATGATAGATATCAAGGAGCCGGAGAATGAGGAGGGGGCAGAATATGTGGATTTGACGATGCGTCAACCTACATTAAAGGTTCTGTTGAACATATTGTTGCGTATGCCACTGTTATGGAGTGCGAGGATCCTTCCCAACTCATTCATGGCACTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

46.48

Weight (kDa)

9.58

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 948
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AccBSI CCGCTC 1 cut(s) 700
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 6 cut(s) 79, 86, 112, 252, 490, 700
AclWI GGATC 3 cut(s) 12, 1189, 1202
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 1 cut(s) 879
AcuI CTGAAG 2 cut(s) 95, 450
AfaI GTAC 1 cut(s) 225
AfeI AGCGCT 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 168, 476, 1036
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 6 cut(s) 18, 397, 734, 896, 1055, 1156
AhdI GACNNNNNGTC 1 cut(s) 1128
AjnI CCWGG 1 cut(s) 973
AluBI AGCT 4 cut(s) 47, 195, 563, 839
AluI AGCT 4 cut(s) 47, 195, 563, 839
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 12, 1189, 1202
Aor13HI TCCGGA 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 427
AoxI GGCC 3 cut(s) 61, 714, 784
ApeKI GCWGC 3 cut(s) 324, 758, 978
ApoI RAATTY 1 cut(s) 879
AsiGI ACCGGT 1 cut(s) 226
Asp718I GGTACC 1 cut(s) 223
AspLEI GCGC 2 cut(s) 324, 428
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 100, 761
BalI TGGCCA 1 cut(s) 786
BamHI GGATCC 1 cut(s) 1194
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 336, 745, 965
BccI CCATC 2 cut(s) 863, 923
BciT130I CCWGG 1 cut(s) 975
BciVI GTATCC 2 cut(s) 348, 1008
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 641, 1225
BfoI RGCGCY 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 948
BfuI GTATCC 2 cut(s) 348, 1008
BisI GCNGC 6 cut(s) 80, 112, 252, 325, 759, 979
BlsI GCNGC 6 cut(s) 81, 113, 253, 326, 760, 980
Bme1390I CCNGG 1 cut(s) 975
BmeRI GACNNNNNGTC 1 cut(s) 1128
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 4 cut(s) 62, 225, 1086, 1196
BmrFI CCNGG 1 cut(s) 975
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 1116
BmuI ACTGGG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 807, 1031
BsaBI GATNNNNATC 2 cut(s) 9, 1076
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 787
BsaWI WCCGGW 2 cut(s) 226, 469
BsaXI ACNNNNNCTCC 6 cut(s) 368, 398, 492, 522, 704, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 476, 1036
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 906
Bse8I GATNNNNATC 2 cut(s) 9, 1076
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 1 cut(s) 975
BseDI CCNNGG 1 cut(s) 787
BseGI GGATG 1 cut(s) 874
BseJI GATNNNNATC 2 cut(s) 9, 1076
BseLI CCNNNNNNNGG 3 cut(s) 168, 476, 1036
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 2 cut(s) 372, 875
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 6 cut(s) 614, 635, 659, 671, 1049, 1112
BseXI GCAGC 3 cut(s) 336, 745, 965
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 3 cut(s) 63, 716, 786
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 226
BsiSI CCGG 3 cut(s) 227, 470, 1088
BslFI GGGAC 3 cut(s) 337, 478, 949
BslI CCNNNNNNNGG 3 cut(s) 168, 476, 1036
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 337, 478, 949
BsnI GGCC 3 cut(s) 63, 716, 786
Bso31I GGTCTC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 4, 10, 1194
Bsp19I CCATGG 1 cut(s) 787
BspACI CCGC 6 cut(s) 79, 86, 112, 252, 490, 700
BspANI GGCC 3 cut(s) 63, 716, 786
BspCNI CTCAG 2 cut(s) 373, 876
BspEI TCCGGA 1 cut(s) 469
BspLI GGNNCC 4 cut(s) 62, 225, 1086, 1196
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 3 cut(s) 12, 1189, 1202
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 787
BssMI GATC 3 cut(s) 4, 10, 1194
BssT1I CCWWGG 1 cut(s) 787
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 5 cut(s) 413, 568, 808, 1031, 1179
Bst6I CTCTTC 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 84, 702
BstDEI CTNAG 6 cut(s) 93, 180, 381, 422, 575, 884
BstDSI CCRYGG 1 cut(s) 787
BstF5I GGATG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 2 cut(s) 324, 428
BstKTI GATC 3 cut(s) 7, 13, 1197
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 4, 10, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 79, 108, 722
BstNI CCWGG 1 cut(s) 975
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 973
BstV1I GCAGC 3 cut(s) 336, 745, 965
BstX2I RGATCY 2 cut(s) 4, 1194
BstXI CCANNNNNNTGG 1 cut(s) 1182
BstYI RGATCY 2 cut(s) 4, 1194
BsuI GTATCC 2 cut(s) 348, 1008
BsuRI GGCC 3 cut(s) 63, 716, 786
BtgI CCRYGG 1 cut(s) 787
BtsCI GGATG 1 cut(s) 874
BtsIMutI CAGTG 2 cut(s) 418, 1175
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 2 cut(s) 84, 702
CfoI GCGC 2 cut(s) 324, 428
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 1118
Csp6I GTAC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 6 cut(s) 83, 99, 476, 788, 919, 1213
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 6 cut(s) 93, 180, 381, 422, 575, 884
DpnI GATC 3 cut(s) 6, 12, 1196
DpnII GATC 3 cut(s) 4, 10, 1194
DriI GACNNNNNGTC 1 cut(s) 1128
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 478
Eam1105I GACNNNNNGTC 1 cut(s) 1128
EarI CTCTTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 1078
Eco47III AGCGCT 1 cut(s) 427
Eco57I CTGAAG 2 cut(s) 95, 450
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 973
EcoRV GATATC 1 cut(s) 1078
EcoT14I CCWWGG 1 cut(s) 787
EcoT22I ATGCAT 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 787
FaeI CATG 6 cut(s) 86, 102, 479, 791, 922, 1216
FaqI GGGAC 3 cut(s) 337, 478, 949
FatI CATG 6 cut(s) 82, 98, 475, 787, 918, 1212
FauI CCCGC 2 cut(s) 483, 693
Fnu4HI GCNGC 6 cut(s) 80, 112, 252, 325, 759, 979
FokI GGATG 1 cut(s) 881
Fsp4HI GCNGC 6 cut(s) 80, 112, 252, 325, 759, 979
FspBI CTAG 2 cut(s) 641, 1225
GlaI GCGC 2 cut(s) 323, 427
GluI GCNGC 6 cut(s) 80, 112, 252, 325, 759, 979
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 3 cut(s) 63, 716, 786
HapII CCGG 3 cut(s) 227, 470, 1088
HgaI GACGC 1 cut(s) 1118
HhaI GCGC 2 cut(s) 324, 428
Hin1II CATG 6 cut(s) 86, 102, 479, 791, 922, 1216
Hin6I GCGC 2 cut(s) 322, 426
HinP1I GCGC 2 cut(s) 322, 426
HincII GTYRAC 4 cut(s) 387, 409, 1027, 1133
HindII GTYRAC 4 cut(s) 387, 409, 1027, 1133
HinfI GANTC 3 cut(s) 50, 118, 466
HpaII CCGG 3 cut(s) 227, 470, 1088
HphI GGTGA 2 cut(s) 100, 761
Hpy166II GTNNAC 5 cut(s) 387, 409, 859, 1027, 1133
Hpy188I TCNGA 2 cut(s) 572, 885
Hpy188III TCNNGA 6 cut(s) 8, 260, 293, 305, 470, 824
Hpy8I GTNNAC 5 cut(s) 387, 409, 859, 1027, 1133
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 8 cut(s) 16, 127, 166, 210, 214, 425, 947, 1208
HpyCH4III ACNGT 5 cut(s) 413, 568, 808, 1031, 1179
HpyCH4IV ACGT 3 cut(s) 286, 301, 541
HpyCH4V TGCA 6 cut(s) 102, 190, 583, 692, 761, 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 108, 722
HpyF3I CTNAG 6 cut(s) 93, 180, 381, 422, 575, 884
HpySE526I ACGT 3 cut(s) 286, 301, 541
Hsp92II CATG 6 cut(s) 86, 102, 479, 791, 922, 1216
HspAI GCGC 2 cut(s) 322, 426
Kpn2I TCCGGA 1 cut(s) 469
KpnI GGTACC 1 cut(s) 227
Kzo9I GATC 3 cut(s) 4, 10, 1194
LmnI GCTCC 3 cut(s) 472, 844, 1084
Lsp1109I GCAGC 3 cut(s) 336, 745, 965
LweI GCATC 1 cut(s) 1116
MaeI CTAG 2 cut(s) 641, 1225
MaeII ACGT 3 cut(s) 286, 301, 541
MaeIII GTNAC 2 cut(s) 88, 508
MalI GATC 3 cut(s) 6, 12, 1196
MbiI CCGCTC 1 cut(s) 700
MboI GATC 3 cut(s) 4, 10, 1194
MboII GAAGA 7 cut(s) 142, 280, 495, 622, 646, 860, 1067
MflI RGATCY 2 cut(s) 4, 1194
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 3 cut(s) 241, 684, 879
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 2 cut(s) 127, 460
MmeI TCCRAC 3 cut(s) 354, 825, 942
Mox20I TGGCCA 1 cut(s) 786
Mph1103I ATGCAT 1 cut(s) 104
MroI TCCGGA 1 cut(s) 469
MscI TGGCCA 1 cut(s) 786
MseI TTAA 4 cut(s) 147, 449, 948, 1142
MslI CAYNNNNRTG 2 cut(s) 774, 1180
Msp20I TGGCCA 1 cut(s) 786
MspI CCGG 3 cut(s) 227, 470, 1088
MspR9I CCNGG 1 cut(s) 975
MvaI CCWGG 1 cut(s) 975
MwoI GCNNNNNNNGC 3 cut(s) 79, 108, 722
NcoI CCATGG 1 cut(s) 787
NdeII GATC 3 cut(s) 4, 10, 1194
NlaIII CATG 6 cut(s) 86, 102, 479, 791, 922, 1216
NlaIV GGNNCC 4 cut(s) 62, 225, 1086, 1196
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 94
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 6 cut(s) 81, 113, 253, 326, 760, 980
PleI GAGTC 2 cut(s) 126, 460
PpsI GAGTC 2 cut(s) 126, 460
Psp6I CCWGG 1 cut(s) 973
PspGI CCWGG 1 cut(s) 973
PspN4I GGNNCC 4 cut(s) 62, 225, 1086, 1196
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 2 cut(s) 4, 1194
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 2 cut(s) 774, 1180
SaqAI TTAA 4 cut(s) 147, 449, 948, 1142
SatI GCNGC 6 cut(s) 80, 112, 252, 325, 759, 979
Sau3AI GATC 3 cut(s) 4, 10, 1194
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 127, 460
ScrFI CCNGG 1 cut(s) 975
SfaNI GCATC 1 cut(s) 1116
SmiMI CAYNNNNRTG 2 cut(s) 774, 1180
SmlI CTYRAG 2 cut(s) 822, 1010
SmoI CTYRAG 2 cut(s) 822, 1010
SphI GCATGC 1 cut(s) 86
Sse9I AATT 3 cut(s) 241, 684, 879
SsiI CCGC 6 cut(s) 79, 86, 112, 252, 490, 700
SspI AATATT 1 cut(s) 591
SspMI CTAG 2 cut(s) 641, 1225
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 5 cut(s) 413, 568, 808, 1031, 1179
TaiI ACGT 3 cut(s) 289, 304, 544
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 241, 684, 879
TauI GCSGC 3 cut(s) 82, 114, 254
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 4 cut(s) 147, 449, 948, 1142
Tru9I TTAA 4 cut(s) 147, 449, 948, 1142
TscAI CASTG 2 cut(s) 418, 1182
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 324, 758, 978
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 1201
TspGWI ACGGA 2 cut(s) 831, 845
TspRI CASTG 2 cut(s) 418, 1182
Tth111I GACNNNGTC 1 cut(s) 94
XapI RAATTY 1 cut(s) 879
XceI RCATGY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XspI CTAG 2 cut(s) 641, 1225
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.