Rw2G011910

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000455
Physical Location & Seq
Forward (+)
12034338 .. 12035662
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011910.1

Sequence Viewer

Length: 870 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTATAGGAAGGTCAAGAACGTTCTCTGTAAATTCCCACAAATACGAGACCAGAAGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCGGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGTCATTAAGAGCATCGAGATCAGAGAGCCCGAGAAGCCCCCGCGTCCTCCTCCTCCTCAGCCGAAACAGAAACCGAAATCTCCACCGCCTCAGCCTCCGTCTCAGTCTCCGCCTCCGCCTCCGCCTACCCCTACTCCTCCGCCTCCGCCTCCGCCTCCGCCTACGCCTACGCCTACCCCTCCGCCTCCGCCTCCGAAACCGGAACAGCCTCTGGTTCCTGCCTGCCCTCGGCGGCCGTGTTGTTCGGATTGTTACGAAGGGCGCCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAGACCGTGTTGCTCGGATTGTTACGAAGGACGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCCGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGCCGTCTGGGTGGTCCCTGCGAAACTGGGTATGGTTACGGCGGGCCTGTCCCTTACATACAGTATGATGGCCACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCAATACTGCTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

289

Amino Acids

31.77

Weight (kDa)

8.46

Isoelectric Point (pI)

73.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 465
AccII CGCG 2 cut(s) 247, 643
AccIII TCCGGA 1 cut(s) 163
AclI AACGTT 1 cut(s) 78
AcoI YGGCCR 5 cut(s) 437, 500, 572, 644, 748
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 2 cut(s) 585, 657
AcyI GRCGYC 4 cut(s) 204, 466, 538, 610
AfaI GTAC 3 cut(s) 116, 592, 664
AfiI CCNNNNNNNGG 1 cut(s) 432
AflIII ACRYGT 4 cut(s) 582, 584, 654, 656
AjnI CCWGG 4 cut(s) 132, 469, 541, 613
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 4 cut(s) 99, 309, 315, 502
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 8 cut(s) 437, 500, 572, 644, 679, 722, 748, 761
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 468, 860
AspS9I GGNCC 5 cut(s) 476, 548, 620, 692, 722
AsuHPI GGTGA 5 cut(s) 28, 148, 517, 589, 661
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 4 cut(s) 476, 548, 620, 692
BalI TGGCCA 1 cut(s) 750
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 234
BbrPI CACGTG 2 cut(s) 585, 657
BbvCI CCTCAGC 2 cut(s) 261, 294
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 740, 869
BceAI ACGGC 4 cut(s) 424, 666, 733, 796
BciT130I CCWGG 4 cut(s) 134, 471, 543, 615
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 4 cut(s) 99, 309, 315, 502
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 2 cut(s) 61, 157
BfoI RGCGCY 1 cut(s) 469
BisI GCNGC 6 cut(s) 157, 190, 437, 500, 572, 644
BlsI GCNGC 6 cut(s) 158, 191, 438, 501, 573, 645
Bme1390I CCNGG 4 cut(s) 134, 471, 543, 615
Bme18I GGWCC 4 cut(s) 476, 548, 620, 692
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 5 cut(s) 476, 548, 620, 692, 722
BmiI GGNNCC 6 cut(s) 420, 467, 478, 550, 622, 694
BmrFI CCNGG 4 cut(s) 134, 471, 543, 615
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 714
Bpu10I CCTNAGC 2 cut(s) 261, 294
BsaAI YACGTR 2 cut(s) 585, 657
BsaHI GRCGYC 4 cut(s) 204, 466, 538, 610
BsaI GGTCTC 2 cut(s) 99, 502
BsaJI CCNNGG 5 cut(s) 431, 469, 494, 566, 641
BsaWI WCCGGW 2 cut(s) 163, 403
BsaXI ACNNNNNCTCC 6 cut(s) 189, 219, 322, 352, 622, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse118I RCCGGY 4 cut(s) 502, 574, 646, 763
Bse1I ACTGG 1 cut(s) 709
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 4 cut(s) 134, 471, 543, 615
BseDI CCNNGG 5 cut(s) 431, 469, 494, 566, 641
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMII CTCAG 3 cut(s) 275, 308, 320
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 5 cut(s) 243, 246, 249, 330, 805
BseX3I CGGCCG 4 cut(s) 437, 500, 572, 644
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 2 cut(s) 247, 643
Bsh1285I CGRYCG 4 cut(s) 440, 503, 575, 647
BshFI GGCC 8 cut(s) 439, 502, 574, 646, 681, 724, 750, 763
BshNI GGYRCC 1 cut(s) 465
BsiEI CGRYCG 4 cut(s) 440, 503, 575, 647
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 6 cut(s) 164, 404, 503, 575, 647, 764
BslFI GGGAC 6 cut(s) 191, 462, 534, 606, 678, 713
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 4 cut(s) 99, 309, 315, 502
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 6 cut(s) 191, 462, 534, 606, 678, 713
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 8 cut(s) 439, 502, 574, 646, 681, 724, 750, 763
Bso31I GGTCTC 2 cut(s) 99, 502
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 138, 171, 222
BspANI GGCC 8 cut(s) 439, 502, 574, 646, 681, 724, 750, 763
BspCNI CTCAG 3 cut(s) 274, 307, 319
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 2 cut(s) 247, 643
BspLI GGNNCC 6 cut(s) 420, 467, 478, 550, 622, 694
BspMAI CTGCAG 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 465
BspTNI GGTCTC 2 cut(s) 99, 502
BsrFI RCCGGY 4 cut(s) 502, 574, 646, 763
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 4 cut(s) 502, 574, 646, 763
BssECI CCNNGG 5 cut(s) 431, 469, 494, 566, 641
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 4 cut(s) 204, 466, 538, 610
Bst2UI CCWGG 4 cut(s) 134, 471, 543, 615
Bst4CI ACNGT 2 cut(s) 513, 741
BstACI GRCGYC 4 cut(s) 204, 466, 538, 610
BstBAI YACGTR 2 cut(s) 585, 657
BstC8I GCNNGC 3 cut(s) 427, 722, 856
BstDEI CTNAG 3 cut(s) 261, 294, 306
BstDSI CCRYGG 1 cut(s) 641
BstFNI CGCG 2 cut(s) 247, 643
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 2 cut(s) 468, 860
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 4 cut(s) 99, 309, 315, 502
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 4 cut(s) 440, 503, 575, 647
BstMWI GCNNNNNNNGC 2 cut(s) 238, 819
BstNI CCWGG 4 cut(s) 134, 471, 543, 615
BstSCI CCNGG 4 cut(s) 132, 469, 541, 613
BstSFI CTRYAG 2 cut(s) 61, 157
BstUI CGCG 2 cut(s) 247, 643
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 4 cut(s) 437, 500, 572, 644
BsuRI GGCC 8 cut(s) 439, 502, 574, 646, 681, 724, 750, 763
BtgI CCRYGG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 53, 841
Cac8I GCNNGC 3 cut(s) 427, 722, 856
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 2 cut(s) 468, 860
Cfr10I RCCGGY 4 cut(s) 502, 574, 646, 763
Cfr13I GGNCC 5 cut(s) 476, 548, 620, 692, 722
Cfr42I CCGCGG 1 cut(s) 644
CseI GACGC 3 cut(s) 193, 236, 599
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 115, 591, 663
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 865
CviQI GTAC 3 cut(s) 115, 591, 663
DdeI CTNAG 3 cut(s) 261, 294, 306
DinI GGCGCC 1 cut(s) 467
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 5 cut(s) 437, 500, 572, 644, 748
EagI CGGCCG 4 cut(s) 437, 500, 572, 644
EciI GGCGGA 9 cut(s) 303, 309, 315, 333, 339, 345, 351, 375, 381
EclXI CGGCCG 4 cut(s) 437, 500, 572, 644
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 2 cut(s) 99, 502
Eco47I GGWCC 4 cut(s) 476, 548, 620, 692
Eco52I CGGCCG 4 cut(s) 437, 500, 572, 644
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 2 cut(s) 585, 657
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 132, 469, 541, 613
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 467
EheI GGCGCC 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 1 cut(s) 868
FaiI YATR 9 cut(s) 23, 63, 187, 711, 737, 744, 756, 771, 866
FaqI GGGAC 6 cut(s) 191, 462, 534, 606, 678, 713
FatI CATG 1 cut(s) 864
FauI CCCGC 3 cut(s) 252, 713, 827
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 157, 190, 437, 500, 572, 644
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 6 cut(s) 157, 190, 437, 500, 572, 644
FspBI CTAG 1 cut(s) 804
GlaI GCGC 2 cut(s) 467, 859
GluI GCNGC 6 cut(s) 157, 190, 437, 500, 572, 644
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 8 cut(s) 439, 502, 574, 646, 681, 724, 750, 763
HapII CCGG 6 cut(s) 164, 404, 503, 575, 647, 764
HgaI GACGC 3 cut(s) 193, 236, 599
HhaI GCGC 2 cut(s) 468, 860
Hin1I GRCGYC 4 cut(s) 204, 466, 538, 610
Hin1II CATG 1 cut(s) 868
Hin6I GCGC 2 cut(s) 466, 858
HinP1I GCGC 2 cut(s) 466, 858
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 28
HpaII CCGG 6 cut(s) 164, 404, 503, 575, 647, 764
HphI GGTGA 5 cut(s) 28, 148, 517, 589, 661
Hpy166II GTNNAC 3 cut(s) 40, 580, 652
Hpy188I TCNGA 5 cut(s) 33, 227, 399, 451, 523
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 3 cut(s) 40, 580, 652
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 9 cut(s) 7, 28, 53, 61, 455, 527, 599, 671, 753
HpyCH4III ACNGT 2 cut(s) 513, 741
HpyCH4IV ACGT 4 cut(s) 78, 538, 584, 656
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 819
HpyF3I CTNAG 3 cut(s) 261, 294, 306
HpySE526I ACGT 4 cut(s) 78, 538, 584, 656
Hsp92I GRCGYC 4 cut(s) 204, 466, 538, 610
Hsp92II CATG 1 cut(s) 868
HspAI GCGC 2 cut(s) 466, 858
KasI GGCGCC 1 cut(s) 465
Kpn2I TCCGGA 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 644
Kzo9I GATC 3 cut(s) 138, 171, 222
LmnI GCTCC 1 cut(s) 792
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 804
MaeII ACGT 4 cut(s) 78, 538, 584, 656
MaeIII GTNAC 9 cut(s) 16, 455, 527, 599, 671, 713, 776, 806, 814
MalI GATC 3 cut(s) 140, 173, 224
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 851
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 750
Mly113I GGCGCC 1 cut(s) 466
Mox20I TGGCCA 1 cut(s) 750
MroI TCCGGA 1 cut(s) 163
MscI TGGCCA 1 cut(s) 750
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 6 cut(s) 164, 404, 503, 575, 647, 764
MspR9I CCNGG 4 cut(s) 134, 471, 543, 615
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 4 cut(s) 134, 471, 543, 615
MvnI CGCG 2 cut(s) 247, 643
MwoI GCNNNNNNNGC 2 cut(s) 238, 819
NarI GGCGCC 1 cut(s) 466
NdeII GATC 3 cut(s) 138, 171, 222
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 6 cut(s) 420, 467, 478, 550, 622, 694
NmeAIII GCCGAG 3 cut(s) 412, 475, 547
NmuCI GTSAC 2 cut(s) 16, 814
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 6 cut(s) 158, 191, 438, 501, 573, 645
PluTI GGCGCC 1 cut(s) 469
PmaCI CACGTG 2 cut(s) 585, 657
PmlI CACGTG 2 cut(s) 585, 657
Ppu21I YACGTR 2 cut(s) 585, 657
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 4 cut(s) 132, 469, 541, 613
PspCI CACGTG 2 cut(s) 585, 657
PspGI CCWGG 4 cut(s) 132, 469, 541, 613
PspN4I GGNNCC 6 cut(s) 420, 467, 478, 550, 622, 694
PspPI GGNCC 5 cut(s) 476, 548, 620, 692, 722
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 415
RsaI GTAC 3 cut(s) 116, 592, 664
RsaNI GTAC 3 cut(s) 115, 591, 663
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 644
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 6 cut(s) 157, 190, 437, 500, 572, 644
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 5 cut(s) 476, 548, 620, 692, 722
ScrFI CCNGG 4 cut(s) 134, 471, 543, 615
SduI GDGCHC 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
SfoI GGCGCC 1 cut(s) 467
Sfr303I CCGCGG 1 cut(s) 644
SgrBI CCGCGG 1 cut(s) 644
SinI GGWCC 4 cut(s) 476, 548, 620, 692
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 89
SspDI GGCGCC 1 cut(s) 465
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 4 cut(s) 132, 469, 541, 613
TaaI ACNGT 2 cut(s) 513, 741
TaiI ACGT 4 cut(s) 81, 541, 587, 659
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 4 cut(s) 439, 502, 574, 646
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 53, 841
TseFI GTSAC 2 cut(s) 16, 814
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 814
TspGWI ACGGA 3 cut(s) 291, 608, 680
TspRI CASTG 2 cut(s) 53, 841
VpaK11BI GGWCC 4 cut(s) 476, 548, 620, 692
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.