MD10G1337700.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
41379617 .. 41380917
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1337700.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGGGGAAAAGGAAAAGGTTACGATTATGGTGCTGAAGGTGGATCTTCAGTGTCACAAATGCTACAAGAAGGTCAAAAAAGTTCTTCGTAAATTCCCTCAAATACAAGATCAGATATATGACGAGAAGCAAAACCAAGTGGTGATCAAAGTGGTATGCTGCAGTCCTGAAAAGATAAGGGACAAGATTTGCTACAAAGGTGGGAGTGTTATCAAAAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCACAGCTTGCAGACAAACCTAAAGGCATAGAAAAACCCAAAGAGGCCGACAAATCTAAACCGGCAGACACACCCAAGGAGGTCCAGAAGTCTATACCACAGATGGAGCTAGTGAAGCATTCTCCTCTTTATATGCAGCCGGTTCCTTATGTGCCAGGGTACCCACCGCCTGTTCAAGCGTGTTGTATGGATTGTTACCAGGGGCGTGCATGTGGGTCGTGGCATAGTGGTTATGGCGGGGGGCCATCCCCGTACATCCAGTATGATGGTTATTATGGGAGGCCTGTGTATGACAGTTACGGCAGTGGCAACAGAGGGTATTATGAAGAAAATCCCTCAGCTTGCACAATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

202

Amino Acids

22.73

Weight (kDa)

8.93

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 2 cut(s) 416, 486
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AfaI GTAC 2 cut(s) 410, 503
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 2 cut(s) 403, 447
AluBI AGCT 3 cut(s) 256, 358, 590
AluI AGCT 3 cut(s) 256, 358, 590
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 294, 491, 530
ApeKI GCWGC 2 cut(s) 159, 385
ApoI RAATTY 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 331, 491
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 408
BanII GRGCYC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 146, 397
BccI CCATC 3 cut(s) 346, 502, 509
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 4 cut(s) 13, 47, 447, 481
BciT130I CCWGG 2 cut(s) 405, 449
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 160, 386
BlsI GCNGC 2 cut(s) 161, 387
Bme1390I CCNGG 2 cut(s) 405, 449
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 331, 491
BmiI GGNNCC 3 cut(s) 393, 410, 492
BmrFI CCNGG 2 cut(s) 405, 449
BmsI GCATC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 324, 404, 448
Bse118I RCCGGY 2 cut(s) 310, 388
Bse1I ACTGG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 405, 449
BseDI CCNNGG 3 cut(s) 324, 404, 448
BseGI GGATG 2 cut(s) 494, 504
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 146, 397
BshFI GGCC 3 cut(s) 296, 493, 532
BshNI GGYRCC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 311, 389
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 3 cut(s) 296, 493, 532
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 43, 109, 144, 225
BspACI CCGC 2 cut(s) 416, 486
BspANI GGCC 3 cut(s) 296, 493, 532
BspCNI CTCAG 1 cut(s) 599
BspLI GGNNCC 3 cut(s) 393, 410, 492
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 310, 388
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 2 cut(s) 310, 388
BssECI CCNNGG 3 cut(s) 324, 404, 448
BssMI GATC 4 cut(s) 43, 109, 144, 225
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 405, 449
Bst4CI ACNGT 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 258, 456, 592
BstDEI CTNAG 1 cut(s) 586
BstF5I GGATG 2 cut(s) 494, 504
BstKTI GATC 4 cut(s) 46, 112, 147, 228
BstMBI GATC 4 cut(s) 43, 109, 144, 225
BstMWI GCNNNNNNNGC 2 cut(s) 241, 364
BstNI CCWGG 2 cut(s) 405, 449
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 403, 447
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 146, 397
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 3 cut(s) 296, 493, 532
BtsCI GGATG 2 cut(s) 494, 504
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 56, 559
Cac8I GCNNGC 3 cut(s) 258, 456, 592
Cfr10I RCCGGY 2 cut(s) 310, 388
Cfr13I GGNCC 2 cut(s) 331, 491
Csp6I GTAC 2 cut(s) 409, 502
CviAII CATG 2 cut(s) 459, 601
CviQI GTAC 2 cut(s) 409, 502
DdeI CTNAG 1 cut(s) 586
DpnI GATC 4 cut(s) 45, 111, 146, 227
DpnII GATC 4 cut(s) 43, 109, 144, 225
Eco130I CCWWGG 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 403, 447
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 2 cut(s) 462, 604
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 458, 600
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 160, 386
FokI GGATG 2 cut(s) 481, 491
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 160, 386
FspBI CTAG 1 cut(s) 359
GluI GCNGC 2 cut(s) 160, 386
HaeIII GGCC 3 cut(s) 296, 493, 532
HapII CCGG 2 cut(s) 311, 389
Hin1II CATG 2 cut(s) 462, 604
HpaII CCGG 2 cut(s) 311, 389
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 167, 223, 334
HpyAV CCTTC 2 cut(s) 31, 64
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 162, 260, 385, 458, 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 364
HpyF3I CTNAG 1 cut(s) 586
Hsp92II CATG 2 cut(s) 462, 604
KpnI GGTACC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 4 cut(s) 43, 109, 144, 225
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 146, 397
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 4 cut(s) 19, 53, 443, 545
MalI GATC 4 cut(s) 45, 111, 146, 227
MboI GATC 4 cut(s) 43, 109, 144, 225
MboII GAAGA 3 cut(s) 38, 77, 587
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 92
MnlI CCTC 7 cut(s) 108, 286, 322, 384, 522, 557, 595
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 2 cut(s) 311, 389
MspR9I CCNGG 2 cut(s) 405, 449
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 405, 449
MwoI GCNNNNNNNGC 2 cut(s) 241, 364
NdeII GATC 4 cut(s) 43, 109, 144, 225
NlaIII CATG 2 cut(s) 462, 604
NlaIV GGNNCC 3 cut(s) 393, 410, 492
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 462
PceI AGGCCT 1 cut(s) 532
PctI GAATGC 1 cut(s) 367
PkrI GCNGC 2 cut(s) 161, 387
Psp6I CCWGG 2 cut(s) 403, 447
PspGI CCWGG 2 cut(s) 403, 447
PspN4I GGNNCC 3 cut(s) 393, 410, 492
PspPI GGNCC 2 cut(s) 331, 491
PstI CTGCAG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 410, 503
RsaNI GTAC 2 cut(s) 409, 502
RseI CAYNNNNRTG 1 cut(s) 599
SatI GCNGC 2 cut(s) 160, 386
Sau3AI GATC 4 cut(s) 43, 109, 144, 225
Sau96I GGNCC 2 cut(s) 331, 491
ScrFI CCNGG 2 cut(s) 405, 449
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 21, 42, 75, 202, 258, 271, 333, 360, 592
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 599
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 2 cut(s) 416, 486
SspMI CTAG 1 cut(s) 359
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 403, 447
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TscAI CASTG 2 cut(s) 56, 559
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 159, 385
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 588
TspRI CASTG 2 cut(s) 56, 559
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 462
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.