Rh2AG152900

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000455
Physical Location & Seq
Forward (+)
14061954 .. 14066309
4356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG152900.1

Sequence Viewer

Length: 825 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGAACGTTCTCTGTAAATTCCCACAAATACGAGACCAGAAGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGTCATTAAGAGCATCGAGATCATAGAGCCTCCGCCACCTCCTCCTCCTCCACCTCCGCCTCCTCCTCCTCCGCCTCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCCGTCTCCTCCTCCTCCTCCTCCTCCGCCTCCGTCTCCTCCTCCTCCTCCTCCGCCTCCGTCTCCTCCGCCTCCGCCTCCTCCTCCGCCTCAGTGCCTTTGCCTTTGCCTTTGCCCTTGCCCTTGCCCTTGCCGTTGCCGGCCGGTGAAACTGTGTTGTTCGGATTGTTACGAAGGGCGTTCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCAGTGAAAACGTGTTGTTCGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGGCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGAGGGCTTGTCCCTTTCATACAGTATGATGGCCACTATGGAAGGCCGGTGTATGACAGTTACGGCGGTGGGAGGAGCAATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

274

Amino Acids

29.7

Weight (kDa)

8.15

Isoelectric Point (pI)

88.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 78
AcoI YGGCCR 4 cut(s) 455, 527, 599, 703
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 1 cut(s) 612
AcyI GRCGYC 3 cut(s) 204, 565, 637
AfaI GTAC 2 cut(s) 116, 619
AflIII ACRYGT 3 cut(s) 539, 609, 611
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 3 cut(s) 132, 568, 640
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 5 cut(s) 99, 288, 324, 354, 381
AoxI GGCC 5 cut(s) 455, 527, 599, 703, 716
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 3 cut(s) 503, 575, 647
AsuHPI GGTGA 4 cut(s) 28, 148, 472, 616
AvaII GGWCC 3 cut(s) 503, 575, 647
BalI TGGCCA 1 cut(s) 705
BbrPI CACGTG 1 cut(s) 612
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 695, 824
BceAI ACGGC 2 cut(s) 432, 751
BciT130I CCWGG 3 cut(s) 134, 570, 642
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 5 cut(s) 99, 288, 324, 354, 381
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 2 cut(s) 61, 157
BisI GCNGC 4 cut(s) 157, 190, 527, 599
BlsI GCNGC 4 cut(s) 158, 191, 528, 600
Bme1390I CCNGG 3 cut(s) 134, 570, 642
Bme18I GGWCC 3 cut(s) 503, 575, 647
BmgT120I GGNCC 3 cut(s) 503, 575, 647
BmiI GGNNCC 3 cut(s) 505, 577, 649
BmrFI CCNGG 3 cut(s) 134, 570, 642
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 669
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 3 cut(s) 204, 565, 637
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 521, 593
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 666, 696
Bse118I RCCGGY 4 cut(s) 453, 457, 601, 718
Bse1I ACTGG 2 cut(s) 530, 664
BseBI CCWGG 3 cut(s) 134, 570, 642
BseDI CCNNGG 2 cut(s) 521, 593
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 530, 664
BseX3I CGGCCG 2 cut(s) 455, 599
BseXI GCAGC 2 cut(s) 143, 176
Bsh1285I CGRYCG 2 cut(s) 458, 602
BshFI GGCC 5 cut(s) 457, 529, 601, 705, 718
BsiEI CGRYCG 2 cut(s) 458, 602
BsiSI CCGG 4 cut(s) 454, 458, 602, 719
BslFI GGGAC 5 cut(s) 191, 489, 561, 633, 668
BsmAI GTCTC 5 cut(s) 99, 288, 324, 354, 381
BsmBI CGTCTC 4 cut(s) 288, 324, 354, 381
BsmFI GGGAC 5 cut(s) 191, 489, 561, 633, 668
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 5 cut(s) 457, 529, 601, 705, 718
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 138, 171, 222
BspANI GGCC 5 cut(s) 457, 529, 601, 705, 718
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 505, 577, 649
BspMAI CTGCAG 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 4 cut(s) 453, 457, 601, 718
BsrI ACTGG 2 cut(s) 530, 664
BssAI RCCGGY 4 cut(s) 453, 457, 601, 718
BssECI CCNNGG 2 cut(s) 521, 593
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 3 cut(s) 204, 565, 637
Bst2UI CCWGG 3 cut(s) 134, 570, 642
Bst4CI ACNGT 3 cut(s) 468, 696, 731
BstACI GRCGYC 3 cut(s) 204, 565, 637
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 455, 811
BstDEI CTNAG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 5 cut(s) 99, 288, 324, 354, 381
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 2 cut(s) 458, 602
BstMWI GCNNNNNNNGC 2 cut(s) 651, 774
BstNI CCWGG 3 cut(s) 134, 570, 642
BstSCI CCNGG 3 cut(s) 132, 568, 640
BstSFI CTRYAG 2 cut(s) 61, 157
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 2 cut(s) 455, 599
BsuRI GGCC 5 cut(s) 457, 529, 601, 705, 718
BtsIMutI CAGTG 4 cut(s) 53, 413, 537, 796
Cac8I GCNNGC 2 cut(s) 455, 811
CfoI GCGC 1 cut(s) 815
Cfr10I RCCGGY 4 cut(s) 453, 457, 601, 718
Cfr13I GGNCC 3 cut(s) 503, 575, 647
CseI GACGC 3 cut(s) 193, 554, 626
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 115, 618
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 820
CviJI RGCY 8 cut(s) 184, 232, 457, 529, 601, 679, 705, 718
CviKI_1 RGCY 8 cut(s) 184, 232, 457, 529, 601, 679, 705, 718
CviQI GTAC 2 cut(s) 115, 618
DdeI CTNAG 1 cut(s) 405
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 4 cut(s) 455, 527, 599, 703
EagI CGGCCG 2 cut(s) 455, 599
EciI GGCGGA 9 cut(s) 225, 249, 264, 300, 330, 357, 372, 378, 390
EclXI CGGCCG 2 cut(s) 455, 599
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 503, 575, 647
Eco52I CGGCCG 2 cut(s) 455, 599
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 1 cut(s) 612
EcoRII CCWGG 3 cut(s) 132, 568, 640
Esp3I CGTCTC 4 cut(s) 288, 324, 354, 381
FaeI CATG 1 cut(s) 823
FaiI YATR 9 cut(s) 23, 187, 227, 666, 692, 699, 711, 726, 821
FaqI GGGAC 5 cut(s) 191, 489, 561, 633, 668
FatI CATG 1 cut(s) 819
FauI CCCGC 1 cut(s) 782
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 157, 190, 527, 599
Fsp4HI GCNGC 4 cut(s) 157, 190, 527, 599
FspBI CTAG 1 cut(s) 759
GlaI GCGC 1 cut(s) 814
GluI GCNGC 4 cut(s) 157, 190, 527, 599
HaeIII GGCC 5 cut(s) 457, 529, 601, 705, 718
HapII CCGG 4 cut(s) 454, 458, 602, 719
HgaI GACGC 3 cut(s) 193, 554, 626
HhaI GCGC 1 cut(s) 815
Hin1I GRCGYC 3 cut(s) 204, 565, 637
Hin1II CATG 1 cut(s) 823
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 28
HpaII CCGG 4 cut(s) 454, 458, 602, 719
HphI GGTGA 4 cut(s) 28, 148, 472, 616
Hpy166II GTNNAC 2 cut(s) 40, 607
Hpy188I TCNGA 3 cut(s) 33, 478, 550
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 2 cut(s) 40, 607
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 8 cut(s) 7, 28, 53, 61, 482, 554, 626, 708
HpyCH4III ACNGT 3 cut(s) 468, 696, 731
HpyCH4IV ACGT 3 cut(s) 78, 539, 611
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 774
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 3 cut(s) 78, 539, 611
Hsp92I GRCGYC 3 cut(s) 204, 565, 637
Hsp92II CATG 1 cut(s) 823
HspAI GCGC 1 cut(s) 813
KroI GCCGGC 1 cut(s) 453
KroNI GCCGGC 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 171, 222
LmnI GCTCC 1 cut(s) 747
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 759
MaeII ACGT 3 cut(s) 78, 539, 611
MaeIII GTNAC 8 cut(s) 16, 482, 554, 626, 668, 731, 761, 769
MalI GATC 3 cut(s) 140, 173, 224
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 806
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 705
Mox20I TGGCCA 1 cut(s) 705
MroNI GCCGGC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 705
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 705
MspI CCGG 4 cut(s) 454, 458, 602, 719
MspR9I CCNGG 3 cut(s) 134, 570, 642
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 3 cut(s) 134, 570, 642
MwoI GCNNNNNNNGC 2 cut(s) 651, 774
NaeI GCCGGC 1 cut(s) 455
NdeII GATC 3 cut(s) 138, 171, 222
NgoMIV GCCGGC 1 cut(s) 453
NlaIII CATG 1 cut(s) 823
NlaIV GGNNCC 3 cut(s) 505, 577, 649
NmeAIII GCCGAG 2 cut(s) 502, 574
NmuCI GTSAC 2 cut(s) 16, 769
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 4 cut(s) 158, 191, 528, 600
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
Ppu21I YACGTR 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 132, 568, 640
PspCI CACGTG 1 cut(s) 612
PspGI CCWGG 3 cut(s) 132, 568, 640
PspN4I GGNNCC 3 cut(s) 505, 577, 649
PspPI GGNCC 3 cut(s) 503, 575, 647
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 116, 619
RsaNI GTAC 2 cut(s) 115, 618
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 4 cut(s) 157, 190, 527, 599
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 3 cut(s) 503, 575, 647
ScrFI CCNGG 3 cut(s) 134, 570, 642
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
SinI GGWCC 3 cut(s) 503, 575, 647
SmiMI CAYNNNNRTG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 3 cut(s) 132, 568, 640
TaaI ACNGT 3 cut(s) 468, 696, 731
TaiI ACGT 3 cut(s) 81, 542, 614
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 529, 601
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 4 cut(s) 53, 413, 537, 796
TseFI GTSAC 2 cut(s) 16, 769
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 769
TspDTI ATGAA 1 cut(s) 679
TspGWI ACGGA 6 cut(s) 270, 306, 336, 363, 635, 687
TspRI CASTG 4 cut(s) 53, 413, 537, 796
VpaK11BI GGWCC 3 cut(s) 503, 575, 647
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.