RLG00000030882

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000455
Physical Location & Seq
Forward (+)
425800 .. 426996
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030882

Sequence Viewer

Length: 678 bp
ATGGGGGAAAAGGAAAAGGTGACGACAATGATTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCCGAGAAGCCCAAGCCAAAGGAGCCGGAGAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCAGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCCAAAGAGCCGGAGAAACCTAAAGAGAAACCCAAAGAGCCACCTGCTGTGATGGTTAACCCGTGTTGTATGGAATGTTACGGAGGGCATCCTGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAACTATGCTACTAGTTTCTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

226

Amino Acids

25.52

Weight (kDa)

8.89

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 591, 628
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 119, 551
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 2 cut(s) 135, 493
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 530, 569
ApeKI GCWGC 2 cut(s) 159, 192
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 209, 668
AspS9I GGNCC 3 cut(s) 43, 500, 530
AsuHPI GGTGA 2 cut(s) 31, 151
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 43, 500
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 146, 179
BccI CCATC 3 cut(s) 448, 548, 677
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 2 cut(s) 137, 495
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 2 cut(s) 160, 193
BlsI GCNGC 2 cut(s) 161, 194
Bme1390I CCNGG 2 cut(s) 137, 495
Bme18I GGWCC 2 cut(s) 43, 500
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 43, 500, 530
BmiI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 502
BmrFI CCNGG 2 cut(s) 137, 495
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 228, 499
BmuI ACTGGG 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 137, 495
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 490
BseNI ACTGG 1 cut(s) 517
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 146, 179
BshFI GGCC 2 cut(s) 532, 571
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 6 cut(s) 260, 293, 353, 383, 413, 572
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 194, 486
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 194, 486
BsnI GGCC 2 cut(s) 532, 571
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 141, 174, 225, 274
BspACI CCGC 2 cut(s) 591, 628
BspANI GGCC 2 cut(s) 532, 571
BspLI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 502
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 4 cut(s) 141, 174, 225, 274
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 137, 495
Bst4CI ACNGT 2 cut(s) 527, 549
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 534, 664
BstF5I GGATG 1 cut(s) 490
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 668
BstKTI GATC 4 cut(s) 144, 177, 228, 277
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 141, 174, 225, 274
BstMWI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 627
BstNI CCWGG 2 cut(s) 137, 495
BstSCI CCNGG 2 cut(s) 135, 493
BstSFI CTRYAG 2 cut(s) 64, 160
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 146, 179
BsuRI GGCC 2 cut(s) 532, 571
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 56, 649
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 534, 664
CfoI GCGC 2 cut(s) 209, 668
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 3 cut(s) 43, 500, 530
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 118, 550
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 673
CviQI GTAC 2 cut(s) 118, 550
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 143, 176, 227, 276
DpnII GATC 4 cut(s) 141, 174, 225, 274
Eco130I CCWWGG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 43, 500
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 135, 493
EcoT14I CCWWGG 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 676
FaiI YATR 8 cut(s) 190, 473, 519, 545, 564, 579, 606, 674
FaqI GGGAC 2 cut(s) 194, 486
FatI CATG 1 cut(s) 672
FauI CCCGC 1 cut(s) 635
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 160, 193
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 160, 193
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 208, 667
GluI GCNGC 2 cut(s) 160, 193
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 532, 571
HapII CCGG 6 cut(s) 260, 293, 353, 383, 413, 572
HhaI GCGC 2 cut(s) 209, 668
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 207, 666
HinP1I GCGC 2 cut(s) 207, 666
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 6 cut(s) 260, 293, 353, 383, 413, 572
HphI GGTGA 2 cut(s) 31, 151
Hpy166II GTNNAC 2 cut(s) 43, 460
Hpy188I TCNGA 2 cut(s) 36, 279
Hpy188III TCNNGA 3 cut(s) 76, 167, 223
Hpy8I GTNNAC 2 cut(s) 43, 460
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 31, 56, 64, 561
HpyCH4III ACNGT 2 cut(s) 527, 549
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 162, 195
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 627
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 207, 666
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 4 cut(s) 141, 174, 225, 274
LmnI GCTCC 5 cut(s) 256, 289, 319, 349, 379
Lsp1109I GCAGC 2 cut(s) 146, 179
LweI GCATC 2 cut(s) 228, 499
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 5 cut(s) 19, 479, 521, 584, 622
MalI GATC 4 cut(s) 143, 176, 227, 276
MboI GATC 4 cut(s) 141, 174, 225, 274
MboII GAAGA 2 cut(s) 139, 659
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 4 cut(s) 108, 194, 479, 591
MseI TTAA 2 cut(s) 213, 459
MslI CAYNNNNRTG 2 cut(s) 149, 495
MspI CCGG 6 cut(s) 260, 293, 353, 383, 413, 572
MspR9I CCNGG 2 cut(s) 137, 495
MvaI CCWGG 2 cut(s) 137, 495
MwoI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 627
NarI GGCGCC 1 cut(s) 207
NdeII GATC 4 cut(s) 141, 174, 225, 274
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 502
NmuCI GTSAC 2 cut(s) 19, 622
PaqCI CACCTGC 1 cut(s) 454
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 161, 194
PluTI GGCGCC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 135, 493
PspGI CCWGG 2 cut(s) 135, 493
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 502
PspPI GGNCC 3 cut(s) 43, 500, 530
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 2 cut(s) 119, 551
RsaNI GTAC 2 cut(s) 118, 550
RseI CAYNNNNRTG 2 cut(s) 149, 495
SaqAI TTAA 2 cut(s) 213, 459
SatI GCNGC 2 cut(s) 160, 193
Sau3AI GATC 4 cut(s) 141, 174, 225, 274
Sau96I GGNCC 3 cut(s) 43, 500, 530
ScrFI CCNGG 2 cut(s) 137, 495
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 2 cut(s) 228, 499
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 2 cut(s) 43, 500
SmiMI CAYNNNNRTG 2 cut(s) 149, 495
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 591, 628
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 135, 493
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 527, 549
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 213, 459
Tru9I TTAA 2 cut(s) 213, 459
TscAI CASTG 2 cut(s) 56, 649
TseFI GTSAC 2 cut(s) 19, 622
TseI GCWGC 2 cut(s) 159, 192
Tsp45I GTSAC 2 cut(s) 19, 622
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 2 cut(s) 56, 649
VpaK11BI GGWCC 2 cut(s) 43, 500
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.