Rh7BG026700

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000455
Physical Location & Seq
Reverse (-)
1883944 .. 1884781
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG026700.1

Sequence Viewer

Length: 573 bp
ATGTACGACGAGAAGAACAACCAGGTGATTATCAAAGTGGTCTGCTGCTGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTACGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCGGCTCCGAAACCGAAACCTGCTCCCGCTCCGGCTCCTAAACCTGCTCCCGCTCCTGCTCCGAAACCTGCTCCGAAACCAGCTCCGGCGCCGGTACCTGCTTGCCCTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTATGGTGCTCCGGCTCCTGCGCCGGTTCCTGCTTGCCGTCCGCGGCCGTTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTACGGTTACAGTGGGCCTGCCCCTTACACACAGTACGATGGCTACTACGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGTATGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

190

Amino Acids

20.11

Weight (kDa)

8.49

Isoelectric Point (pI)

68.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 166, 190, 214, 244
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 3 cut(s) 92, 226, 232
AccBSI CCGCTC 2 cut(s) 167, 191
AccII CGCG 2 cut(s) 250, 358
AciI CCGC 8 cut(s) 165, 189, 248, 250, 356, 358, 498, 523
AcoI YGGCCR 2 cut(s) 251, 359
AcyI GRCGYC 4 cut(s) 93, 227, 289, 397
AfaI GTAC 4 cut(s) 5, 234, 425, 458
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 2 cut(s) 21, 400
AluBI AGCT 2 cut(s) 73, 221
AluI AGCT 2 cut(s) 73, 221
Alw21I GWGCWC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 251, 359, 437, 476
ApeKI GCWGC 2 cut(s) 45, 78
Asp718I GGTACC 1 cut(s) 232
AspLEI GCGC 4 cut(s) 95, 229, 337, 563
AspS9I GGNCC 3 cut(s) 299, 407, 437
AsuHPI GGTGA 2 cut(s) 37, 268
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 299, 407
BanI GGYRCC 3 cut(s) 92, 226, 232
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 32, 65
BccI CCATC 2 cut(s) 455, 572
BceAI ACGGC 3 cut(s) 336, 346, 511
BciT130I CCWGG 2 cut(s) 23, 402
BfoI RGCGCY 2 cut(s) 96, 230
BfuAI ACCTGC 4 cut(s) 166, 190, 214, 244
BisI GCNGC 4 cut(s) 46, 79, 251, 359
BlsI GCNGC 4 cut(s) 47, 80, 252, 360
Bme1390I CCNGG 2 cut(s) 23, 402
Bme18I GGWCC 2 cut(s) 299, 407
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 299, 407, 437
BmiI GGNNCC 9 cut(s) 94, 144, 174, 228, 234, 301, 330, 342, 409
BmrFI CCNGG 2 cut(s) 23, 402
BmrI ACTGGG 2 cut(s) 321, 429
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 2 cut(s) 321, 429
BsaHI GRCGYC 4 cut(s) 93, 227, 289, 397
BsaJI CCNNGG 2 cut(s) 248, 356
Bse118I RCCGGY 4 cut(s) 229, 253, 337, 478
Bse1I ACTGG 2 cut(s) 316, 424
BseBI CCWGG 2 cut(s) 23, 402
BseDI CCNNGG 2 cut(s) 248, 356
BseNI ACTGG 2 cut(s) 316, 424
BseRI GAGGAG 1 cut(s) 520
BseX3I CGGCCG 2 cut(s) 251, 359
BseXI GCAGC 2 cut(s) 32, 65
Bsh1236I CGCG 2 cut(s) 250, 358
Bsh1285I CGRYCG 2 cut(s) 254, 362
BshFI GGCC 4 cut(s) 253, 361, 439, 478
BshNI GGYRCC 3 cut(s) 92, 226, 232
BsiEI CGRYCG 2 cut(s) 254, 362
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 8 cut(s) 140, 170, 224, 230, 254, 326, 338, 479
BslFI GGGAC 3 cut(s) 80, 285, 393
BsmFI GGGAC 3 cut(s) 80, 285, 393
BsnI GGCC 4 cut(s) 253, 361, 439, 478
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 123, 325
Bsp143I GATC 2 cut(s) 60, 111
BspACI CCGC 8 cut(s) 165, 189, 248, 250, 356, 358, 498, 523
BspANI GGCC 4 cut(s) 253, 361, 439, 478
BspFNI CGCG 2 cut(s) 250, 358
BspLI GGNNCC 9 cut(s) 94, 144, 174, 228, 234, 301, 330, 342, 409
BspMI ACCTGC 4 cut(s) 166, 190, 214, 244
BspT107I GGYRCC 3 cut(s) 92, 226, 232
BsrBI CCGCTC 2 cut(s) 167, 191
BsrFI RCCGGY 4 cut(s) 229, 253, 337, 478
BsrI ACTGG 2 cut(s) 316, 424
BssAI RCCGGY 4 cut(s) 229, 253, 337, 478
BssECI CCNNGG 2 cut(s) 248, 356
BssMI GATC 2 cut(s) 60, 111
BssNI GRCGYC 4 cut(s) 93, 227, 289, 397
Bst2UI CCWGG 2 cut(s) 23, 402
Bst4CI ACNGT 3 cut(s) 428, 434, 456
BstACI GRCGYC 4 cut(s) 93, 227, 289, 397
BstC8I GCNNGC 3 cut(s) 241, 349, 441
BstDSI CCRYGG 2 cut(s) 248, 356
BstFNI CGCG 2 cut(s) 250, 358
BstH2I RGCGCY 2 cut(s) 96, 230
BstHHI GCGC 4 cut(s) 95, 229, 337, 563
BstKTI GATC 2 cut(s) 63, 114
BstMBI GATC 2 cut(s) 60, 111
BstMCI CGRYCG 2 cut(s) 254, 362
BstMWI GCNNNNNNNGC 2 cut(s) 127, 522
BstNI CCWGG 2 cut(s) 23, 402
BstSCI CCNGG 2 cut(s) 21, 400
BstUI CGCG 2 cut(s) 250, 358
BstV1I GCAGC 2 cut(s) 32, 65
BstZI CGGCCG 2 cut(s) 251, 359
BsuRI GGCC 4 cut(s) 253, 361, 439, 478
BtgI CCRYGG 2 cut(s) 248, 356
BtsIMutI CAGTG 2 cut(s) 439, 544
BveI ACCTGC 4 cut(s) 166, 190, 214, 244
Cac8I GCNNGC 3 cut(s) 241, 349, 441
CfoI GCGC 4 cut(s) 95, 229, 337, 563
Cfr10I RCCGGY 4 cut(s) 229, 253, 337, 478
Cfr13I GGNCC 3 cut(s) 299, 407, 437
Cfr42I CCGCGG 2 cut(s) 251, 359
CseI GACGC 2 cut(s) 278, 386
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 4 cut(s) 4, 233, 424, 457
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 293, 568
CviQI GTAC 4 cut(s) 4, 233, 424, 457
DinI GGCGCC 2 cut(s) 94, 228
DpnI GATC 2 cut(s) 62, 113
DpnII GATC 2 cut(s) 60, 111
EaeI YGGCCR 2 cut(s) 251, 359
EagI CGGCCG 2 cut(s) 251, 359
EclXI CGGCCG 2 cut(s) 251, 359
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 299, 407
Eco52I CGGCCG 2 cut(s) 251, 359
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 21, 400
EcoT38I GRGCYC 1 cut(s) 123
EgeI GGCGCC 2 cut(s) 94, 228
EheI GGCGCC 2 cut(s) 94, 228
FaeI CATG 2 cut(s) 296, 571
FaiI YATR 8 cut(s) 76, 272, 294, 318, 380, 486, 559, 569
FaqI GGGAC 3 cut(s) 80, 285, 393
FatI CATG 2 cut(s) 292, 567
FauI CCCGC 3 cut(s) 172, 196, 530
Fnu4HI GCNGC 4 cut(s) 46, 79, 251, 359
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 46, 79, 251, 359
GlaI GCGC 4 cut(s) 94, 228, 336, 562
GluI GCNGC 4 cut(s) 46, 79, 251, 359
HaeII RGCGCY 2 cut(s) 96, 230
HaeIII GGCC 4 cut(s) 253, 361, 439, 478
HapII CCGG 8 cut(s) 140, 170, 224, 230, 254, 326, 338, 479
HgaI GACGC 2 cut(s) 278, 386
HhaI GCGC 4 cut(s) 95, 229, 337, 563
Hin1I GRCGYC 4 cut(s) 93, 227, 289, 397
Hin1II CATG 2 cut(s) 296, 571
Hin6I GCGC 4 cut(s) 93, 227, 335, 561
HinP1I GCGC 4 cut(s) 93, 227, 335, 561
HpaII CCGG 8 cut(s) 140, 170, 224, 230, 254, 326, 338, 479
HphI GGTGA 2 cut(s) 37, 268
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 147, 201, 213
Hpy188III TCNNGA 2 cut(s) 53, 109
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 386, 468
HpyCH4III ACNGT 3 cut(s) 428, 434, 456
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 522
Hsp92I GRCGYC 4 cut(s) 93, 227, 289, 397
Hsp92II CATG 2 cut(s) 296, 571
HspAI GCGC 4 cut(s) 93, 227, 335, 561
KasI GGCGCC 2 cut(s) 92, 226
KpnI GGTACC 1 cut(s) 236
KspI CCGCGG 2 cut(s) 251, 359
Kzo9I GATC 2 cut(s) 60, 111
Lsp1109I GCAGC 2 cut(s) 32, 65
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 21
MaeIII GTNAC 6 cut(s) 278, 386, 428, 491, 509, 517
MalI GATC 2 cut(s) 62, 113
MbiI CCGCTC 2 cut(s) 167, 191
MboI GATC 2 cut(s) 60, 111
MboII GAAGA 2 cut(s) 25, 554
MhlI GDGCHC 2 cut(s) 123, 325
Mly113I GGCGCC 2 cut(s) 93, 227
MnlI CCTC 5 cut(s) 80, 147, 255, 278, 498
MspA1I CMGCKG 2 cut(s) 250, 358
MspI CCGG 8 cut(s) 140, 170, 224, 230, 254, 326, 338, 479
MspR9I CCNGG 2 cut(s) 23, 402
MvaI CCWGG 2 cut(s) 23, 402
MvnI CGCG 2 cut(s) 250, 358
MwoI GCNNNNNNNGC 2 cut(s) 127, 522
NarI GGCGCC 2 cut(s) 93, 227
NdeII GATC 2 cut(s) 60, 111
NlaIII CATG 2 cut(s) 296, 571
NlaIV GGNNCC 9 cut(s) 94, 144, 174, 228, 234, 301, 330, 342, 409
NmuCI GTSAC 1 cut(s) 517
PkrI GCNGC 4 cut(s) 47, 80, 252, 360
PluTI GGCGCC 2 cut(s) 96, 230
Psp6I CCWGG 2 cut(s) 21, 400
PspGI CCWGG 2 cut(s) 21, 400
PspN4I GGNNCC 9 cut(s) 94, 144, 174, 228, 234, 301, 330, 342, 409
PspPI GGNCC 3 cut(s) 299, 407, 437
RsaI GTAC 4 cut(s) 5, 234, 425, 458
RsaNI GTAC 4 cut(s) 4, 233, 424, 457
SacII CCGCGG 2 cut(s) 251, 359
SatI GCNGC 4 cut(s) 46, 79, 251, 359
Sau3AI GATC 2 cut(s) 60, 111
Sau96I GGNCC 3 cut(s) 299, 407, 437
ScrFI CCNGG 2 cut(s) 23, 402
SduI GDGCHC 2 cut(s) 123, 325
SetI ASST 8 cut(s) 27, 75, 91, 160, 184, 208, 223, 238
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 2 cut(s) 94, 228
Sfr303I CCGCGG 2 cut(s) 251, 359
SgrBI CCGCGG 2 cut(s) 251, 359
SinI GGWCC 2 cut(s) 299, 407
SsiI CCGC 8 cut(s) 165, 189, 248, 250, 356, 358, 498, 523
SspDI GGCGCC 2 cut(s) 92, 226
StyD4I CCNGG 2 cut(s) 21, 400
TaaI ACNGT 3 cut(s) 428, 434, 456
TaqI TCGA 1 cut(s) 108
TauI GCSGC 2 cut(s) 253, 361
TscAI CASTG 2 cut(s) 439, 544
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 45, 78
Tsp45I GTSAC 1 cut(s) 517
TspGWI ACGGA 2 cut(s) 297, 486
TspRI CASTG 2 cut(s) 439, 544
VpaK11BI GGWCC 2 cut(s) 299, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.