Rw7G002210

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000455
Physical Location & Seq
Reverse (-)
1842622 .. 1844964
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002210.1

Sequence Viewer

Length: 783 bp
ATGGGTGTCTTTAGCTTTAGGGTTCAATGTCCAAGAAGGTGGCTATTAATTCCACATCAATCATGGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTCCTCTGTAAATTCCCTCAAATACGAGACCAGATGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCTGTCCCGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTGCTCCCGCTCCGGCTCCGAAACCTGCACCGGCTCCGGCTCCGAAACCTGCTCCCGCTCCTGCTCCGAAACCGGCTCCGGCTCCGGCGGGGGTACCTGCTTGCCCTCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTACGGTGCTCCGGCTCCACCTCCTGCTCCGAAACCTTCTCCGGCTCCTGTGCCGGTTCCTCCTTGCCGTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTCACAGATGGCCTGCCCCTTACACACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGGGTGCGCAATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

260

Amino Acids

28.3

Weight (kDa)

9.1

Isoelectric Point (pI)

74.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 772
Acc36I ACCTGC 4 cut(s) 328, 352, 376, 424
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 254, 412
AccBSI CCGCTC 2 cut(s) 329, 377
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 568
AciI CCGC 8 cut(s) 327, 375, 407, 430, 566, 568, 708, 733
AcoI YGGCCR 2 cut(s) 431, 569
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 80, 104
AcyI GRCGYC 3 cut(s) 255, 469, 607
AfaI GTAC 4 cut(s) 167, 414, 497, 668
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 2 cut(s) 183, 610
AluBI AGCT 2 cut(s) 15, 235
AluI AGCT 2 cut(s) 15, 235
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 431, 569, 647, 686
ApeKI GCWGC 2 cut(s) 207, 240
ApoI RAATTY 1 cut(s) 140
AseI ATTAAT 1 cut(s) 47
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 2 cut(s) 257, 773
AspS9I GGNCC 2 cut(s) 479, 617
AsuHPI GGTGA 4 cut(s) 79, 199, 448, 586
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 479, 617
BanI GGYRCC 2 cut(s) 254, 412
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 2 cut(s) 194, 227
BccI CCATC 2 cut(s) 639, 665
BceAI ACGGC 2 cut(s) 546, 721
BciT130I CCWGG 2 cut(s) 185, 612
BclI TGATCA 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 4 cut(s) 328, 352, 376, 424
BisI GCNGC 4 cut(s) 208, 241, 431, 569
BlsI GCNGC 4 cut(s) 209, 242, 432, 570
Bme1390I CCNGG 2 cut(s) 185, 612
Bme18I GGWCC 2 cut(s) 479, 617
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 479, 617
BmrFI CCNGG 2 cut(s) 185, 612
BmrI ACTGGG 2 cut(s) 501, 639
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 2 cut(s) 501, 639
BsaHI GRCGYC 3 cut(s) 255, 469, 607
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 425, 566, 763
Bse118I RCCGGY 6 cut(s) 349, 391, 433, 547, 571, 688
Bse1I ACTGG 2 cut(s) 496, 634
BseBI CCWGG 2 cut(s) 185, 612
BseDI CCNNGG 3 cut(s) 425, 566, 763
BseNI ACTGG 2 cut(s) 496, 634
BseRI GAGGAG 1 cut(s) 730
BseX3I CGGCCG 2 cut(s) 431, 569
BseXI GCAGC 2 cut(s) 194, 227
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 568
Bsh1285I CGRYCG 2 cut(s) 434, 572
BshFI GGCC 4 cut(s) 433, 571, 649, 688
BshNI GGYRCC 2 cut(s) 254, 412
BsiEI CGRYCG 2 cut(s) 434, 572
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 4 cut(s) 198, 242, 465, 603
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 4 cut(s) 198, 242, 465, 603
BsnI GGCC 4 cut(s) 433, 571, 649, 688
Bso31I GGTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 285, 505
Bsp143I GATC 3 cut(s) 189, 222, 273
BspACI CCGC 8 cut(s) 327, 375, 407, 430, 566, 568, 708, 733
BspANI GGCC 4 cut(s) 433, 571, 649, 688
BspFNI CGCG 1 cut(s) 568
BspMI ACCTGC 4 cut(s) 328, 352, 376, 424
BspT107I GGYRCC 2 cut(s) 254, 412
BspTNI GGTCTC 1 cut(s) 150
BsrBI CCGCTC 2 cut(s) 329, 377
BsrFI RCCGGY 6 cut(s) 349, 391, 433, 547, 571, 688
BsrI ACTGG 2 cut(s) 496, 634
BssAI RCCGGY 6 cut(s) 349, 391, 433, 547, 571, 688
BssECI CCNNGG 3 cut(s) 425, 566, 763
BssMI GATC 3 cut(s) 189, 222, 273
BssNI GRCGYC 3 cut(s) 255, 469, 607
BssT1I CCWWGG 1 cut(s) 763
Bst2UI CCWGG 2 cut(s) 185, 612
Bst4CI ACNGT 2 cut(s) 500, 666
BstACI GRCGYC 3 cut(s) 255, 469, 607
BstC8I GCNNGC 2 cut(s) 421, 651
BstDSI CCRYGG 1 cut(s) 566
BstFNI CGCG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 257, 773
BstKTI GATC 3 cut(s) 192, 225, 276
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 189, 222, 273
BstMCI CGRYCG 2 cut(s) 434, 572
BstMWI GCNNNNNNNGC 2 cut(s) 289, 732
BstNI CCWGG 2 cut(s) 185, 612
BstSCI CCNGG 2 cut(s) 183, 610
BstSFI CTRYAG 1 cut(s) 112
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 2 cut(s) 194, 227
BstXI CCANNNNNNTGG 1 cut(s) 39
BstZI CGGCCG 2 cut(s) 431, 569
BsuRI GGCC 4 cut(s) 433, 571, 649, 688
BtgI CCRYGG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 104, 754
BveI ACCTGC 4 cut(s) 328, 352, 376, 424
Cac8I GCNNGC 2 cut(s) 421, 651
CfoI GCGC 2 cut(s) 257, 773
Cfr10I RCCGGY 6 cut(s) 349, 391, 433, 547, 571, 688
Cfr13I GGNCC 2 cut(s) 479, 617
Cfr42I CCGCGG 1 cut(s) 569
CseI GACGC 2 cut(s) 458, 596
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 4 cut(s) 166, 413, 496, 667
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 3 cut(s) 63, 473, 778
CviQI GTAC 4 cut(s) 166, 413, 496, 667
DinI GGCGCC 1 cut(s) 256
DpnI GATC 3 cut(s) 191, 224, 275
DpnII GATC 3 cut(s) 189, 222, 273
EaeI YGGCCR 2 cut(s) 431, 569
EagI CGGCCG 2 cut(s) 431, 569
EclXI CGGCCG 2 cut(s) 431, 569
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 479, 617
Eco52I CGGCCG 2 cut(s) 431, 569
Eco57I CTGAAG 2 cut(s) 80, 104
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 183, 610
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 3 cut(s) 66, 476, 781
FaqI GGGAC 4 cut(s) 198, 242, 465, 603
FatI CATG 3 cut(s) 62, 472, 777
FauI CCCGC 4 cut(s) 334, 382, 400, 740
FbaI TGATCA 1 cut(s) 189
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 208, 241, 431, 569
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 4 cut(s) 208, 241, 431, 569
FspI TGCGCA 1 cut(s) 772
GlaI GCGC 2 cut(s) 256, 772
GluI GCNGC 4 cut(s) 208, 241, 431, 569
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 4 cut(s) 433, 571, 649, 688
HgaI GACGC 2 cut(s) 458, 596
HhaI GCGC 2 cut(s) 257, 773
Hin1I GRCGYC 3 cut(s) 255, 469, 607
Hin1II CATG 3 cut(s) 66, 476, 781
Hin6I GCGC 2 cut(s) 255, 771
HinP1I GCGC 2 cut(s) 255, 771
HinfI GANTC 1 cut(s) 79
HphI GGTGA 4 cut(s) 79, 199, 448, 586
Hpy166II GTNNAC 3 cut(s) 91, 439, 577
Hpy188I TCNGA 6 cut(s) 84, 315, 339, 363, 387, 525
Hpy188III TCNNGA 3 cut(s) 124, 215, 271
Hpy8I GTNNAC 3 cut(s) 91, 439, 577
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 8 cut(s) 30, 79, 104, 112, 312, 540, 596, 678
HpyCH4III ACNGT 2 cut(s) 500, 666
HpyCH4V TGCA 2 cut(s) 243, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 732
Hsp92I GRCGYC 3 cut(s) 255, 469, 607
Hsp92II CATG 3 cut(s) 66, 476, 781
HspAI GCGC 2 cut(s) 255, 771
KasI GGCGCC 1 cut(s) 254
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 189
KspI CCGCGG 1 cut(s) 569
Kzo9I GATC 3 cut(s) 189, 222, 273
Lsp1109I GCAGC 2 cut(s) 194, 227
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 183
MaeIII GTNAC 7 cut(s) 67, 458, 596, 638, 701, 719, 727
MalI GATC 3 cut(s) 191, 224, 275
MbiI CCGCTC 2 cut(s) 329, 377
MboI GATC 3 cut(s) 189, 222, 273
MboII GAAGA 2 cut(s) 187, 764
MhlI GDGCHC 2 cut(s) 285, 505
MluCI AATT 2 cut(s) 48, 140
Mly113I GGCGCC 1 cut(s) 255
MnlI CCTC 9 cut(s) 143, 156, 242, 309, 435, 458, 525, 564, 708
MseI TTAA 2 cut(s) 47, 261
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 568
MspR9I CCNGG 2 cut(s) 185, 612
MvaI CCWGG 2 cut(s) 185, 612
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 289, 732
NarI GGCGCC 1 cut(s) 255
NdeII GATC 3 cut(s) 189, 222, 273
NlaIII CATG 3 cut(s) 66, 476, 781
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 67, 638, 727
NsbI TGCGCA 1 cut(s) 772
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 4 cut(s) 209, 242, 432, 570
PluTI GGCGCC 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 183, 610
PspGI CCWGG 2 cut(s) 183, 610
PspPI GGNCC 2 cut(s) 479, 617
RsaI GTAC 4 cut(s) 167, 414, 497, 668
RsaNI GTAC 4 cut(s) 166, 413, 496, 667
RseI CAYNNNNRTG 1 cut(s) 197
SacII CCGCGG 1 cut(s) 569
SaqAI TTAA 2 cut(s) 47, 261
SatI GCNGC 4 cut(s) 208, 241, 431, 569
Sau3AI GATC 3 cut(s) 189, 222, 273
Sau96I GGNCC 2 cut(s) 479, 617
ScrFI CCNGG 2 cut(s) 185, 612
SduI GDGCHC 2 cut(s) 285, 505
SexAI ACCWGGT 1 cut(s) 183
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 112
SfoI GGCGCC 1 cut(s) 256
Sfr303I CCGCGG 1 cut(s) 569
SgrBI CCGCGG 1 cut(s) 569
SinI GGWCC 2 cut(s) 479, 617
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 2 cut(s) 48, 140
SsiI CCGC 8 cut(s) 327, 375, 407, 430, 566, 568, 708, 733
SspDI GGCGCC 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 183, 610
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 2 cut(s) 500, 666
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 48, 140
TauI GCSGC 2 cut(s) 433, 571
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 47, 261
Tru9I TTAA 2 cut(s) 47, 261
TscAI CASTG 2 cut(s) 104, 754
TseFI GTSAC 3 cut(s) 67, 638, 727
TseI GCWGC 2 cut(s) 207, 240
Tsp45I GTSAC 3 cut(s) 67, 638, 727
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 104, 754
VpaK11BI GGWCC 2 cut(s) 479, 617
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.