RLG00000028759

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000455
Physical Location & Seq
Forward (+)
27526014 .. 27527425
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028759

Sequence Viewer

Length: 666 bp
ATGGGGGAAGAGAAGGTGACTATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGTGACCAGACGTACGAGGAGAAGAACGACCAGGTGATCATCAAAGTGGTTTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCAGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAAGAAACCGAGGAGGAAAAGAAACCACCAGAGGAAGATAAATCCAAAGCCGGCGAGACTAAAGGGAAACCAAAGAAAGATAAATCCAAAGACGGCGAGAAGCAGAAGGATGAGTCGGAGTCGAAGCCGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCAAAACTCGCCCTCCGCCGCCGCCGGTGAACCCGTGTTGTATGGAATGTTACGGTGGGCGTCATTGTGGTCCCTGCGAAACTAGGTATGGTTACGGGAGGCTTGCCCTTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCACCCCGATTGTTTCTGTGAAGAAAATCCCCAAGCGTGCCCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

222

Amino Acids

24.97

Weight (kDa)

8.41

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 4 cut(s) 434, 437, 440, 579
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 26, 50
AcyI GRCGYC 3 cut(s) 201, 403, 478
AfaI GTAC 2 cut(s) 113, 539
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 181, 591
AluI AGCT 2 cut(s) 181, 591
Alw26I GTCTC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 153, 186
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 413, 488
AsuHPI GGTGA 3 cut(s) 28, 145, 457
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 413, 488
BaeGI GKGCMC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 140, 198
BccI CCATC 2 cut(s) 536, 665
BceAI ACGGC 2 cut(s) 349, 592
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 2 cut(s) 501, 600
BfmI CTRYAG 2 cut(s) 58, 154
BfoI RGCGCY 1 cut(s) 204
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 154, 187, 437, 440
BlsI GCNGC 4 cut(s) 155, 188, 438, 441
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 413, 488
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 413, 488
BmiI GGNNCC 3 cut(s) 202, 415, 490
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 101
BsaHI GRCGYC 3 cut(s) 201, 403, 478
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bse118I RCCGGY 3 cut(s) 290, 442, 559
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 355
BseRI GAGGAG 3 cut(s) 131, 266, 601
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 2 cut(s) 140, 198
BshFI GGCC 1 cut(s) 559
BshNI GGYRCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 3 cut(s) 291, 443, 560
BsiWI CGTACG 1 cut(s) 111
BslFI GGGAC 3 cut(s) 188, 399, 474
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 3 cut(s) 188, 399, 474
BsnI GGCC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 231, 656
Bsp143I GATC 4 cut(s) 37, 135, 168, 219
BspACI CCGC 4 cut(s) 434, 437, 440, 579
BspANI GGCC 1 cut(s) 559
BspLI GGNNCC 3 cut(s) 202, 415, 490
BspMAI CTGCAG 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 3 cut(s) 290, 442, 559
BssAI RCCGGY 3 cut(s) 290, 442, 559
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 4 cut(s) 37, 135, 168, 219
BssNI GRCGYC 3 cut(s) 201, 403, 478
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 473, 537
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 3 cut(s) 201, 403, 478
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 292, 522, 652
BstF5I GGATG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 4 cut(s) 40, 138, 171, 222
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 4 cut(s) 37, 135, 168, 219
BstMWI GCNNNNNNNGC 2 cut(s) 235, 426
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 58, 154
BstSLI GKGCMC 1 cut(s) 656
BstV1I GCAGC 2 cut(s) 140, 198
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 559
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 3 cut(s) 292, 522, 652
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 3 cut(s) 290, 442, 559
Cfr13I GGNCC 2 cut(s) 413, 488
CseI GACGC 2 cut(s) 392, 467
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 2 cut(s) 112, 538
CspCI CAANNNNNGTGG 4 cut(s) 178, 213, 605, 640
CviAII CATG 2 cut(s) 407, 661
CviJI RGCY 9 cut(s) 181, 229, 238, 290, 367, 520, 546, 559, 591
CviKI_1 RGCY 9 cut(s) 181, 229, 238, 290, 367, 520, 546, 559, 591
CviQI GTAC 2 cut(s) 112, 538
DinI GGCGCC 1 cut(s) 202
DpnI GATC 4 cut(s) 39, 137, 170, 221
DpnII GATC 4 cut(s) 37, 135, 168, 219
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 413, 488
Eco57I CTGAAG 2 cut(s) 26, 50
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
FaeI CATG 2 cut(s) 410, 664
FaqI GGGAC 3 cut(s) 188, 399, 474
FatI CATG 2 cut(s) 406, 660
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 154, 187, 437, 440
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 154, 187, 437, 440
FspBI CTAG 2 cut(s) 501, 600
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 154, 187, 437, 440
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 559
HapII CCGG 3 cut(s) 291, 443, 560
HgaI GACGC 2 cut(s) 392, 467
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 3 cut(s) 201, 403, 478
Hin1II CATG 2 cut(s) 410, 664
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 3 cut(s) 25, 353, 359
HpaII CCGG 3 cut(s) 291, 443, 560
HphI GGTGA 3 cut(s) 28, 145, 457
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 30, 358
Hpy188III TCNNGA 3 cut(s) 70, 161, 217
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 5 cut(s) 7, 25, 58, 340, 549
HpyCH4III ACNGT 2 cut(s) 473, 537
HpyCH4IV ACGT 2 cut(s) 100, 110
HpyCH4V TGCA 3 cut(s) 156, 186, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 426
HpySE526I ACGT 2 cut(s) 100, 110
Hsp92I GRCGYC 3 cut(s) 201, 403, 478
Hsp92II CATG 2 cut(s) 410, 664
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 37, 135, 168, 219
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 2 cut(s) 140, 198
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 2 cut(s) 501, 600
MaeII ACGT 2 cut(s) 100, 110
MaeIII GTNAC 8 cut(s) 16, 101, 392, 467, 509, 572, 602, 610
MalI GATC 4 cut(s) 39, 137, 170, 221
MboI GATC 4 cut(s) 37, 135, 168, 219
MboII GAAGA 6 cut(s) 20, 32, 133, 287, 382, 647
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 231, 656
MluCI AATT 1 cut(s) 86
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 2 cut(s) 362, 368
MmeI TCCRAC 1 cut(s) 336
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 3 cut(s) 291, 443, 560
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 235, 426
NaeI GCCGGC 1 cut(s) 292
NarI GGCGCC 1 cut(s) 201
NdeII GATC 4 cut(s) 37, 135, 168, 219
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 410, 664
NlaIV GGNNCC 3 cut(s) 202, 415, 490
NmuCI GTSAC 3 cut(s) 16, 101, 610
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 25
Pfl23II CGTACG 1 cut(s) 111
PkrI GCNGC 4 cut(s) 155, 188, 438, 441
PleI GAGTC 2 cut(s) 361, 367
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 2 cut(s) 361, 367
Ppu21I YACGTR 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspLI CGTACG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 202, 415, 490
PspPI GGNCC 2 cut(s) 413, 488
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 113, 539
RsaNI GTAC 2 cut(s) 112, 538
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 154, 187, 437, 440
Sau3AI GATC 4 cut(s) 37, 135, 168, 219
Sau96I GGNCC 2 cut(s) 413, 488
SchI GAGTC 2 cut(s) 362, 368
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 231, 656
SexAI ACCWGGT 1 cut(s) 129
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 2 cut(s) 58, 154
SfoI GGCGCC 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 442
SinI GGWCC 2 cut(s) 413, 488
SmiMI CAYNNNNRTG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 1 cut(s) 86
SsiI CCGC 4 cut(s) 434, 437, 440, 579
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 2 cut(s) 501, 600
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 473, 537
TaiI ACGT 2 cut(s) 103, 113
TaqI TCGA 2 cut(s) 216, 362
TasI AATT 1 cut(s) 86
TauI GCSGC 2 cut(s) 439, 442
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 3 cut(s) 16, 101, 610
TseI GCWGC 2 cut(s) 153, 186
Tsp45I GTSAC 3 cut(s) 16, 101, 610
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 413, 488
XapI RAATTY 1 cut(s) 86
XspI CTAG 2 cut(s) 501, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.