Rroxscaffold_1G00075580

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000455
Physical Location & Seq
Reverse (-)
96265502 .. 96267379
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075580.1

Sequence Viewer

Length: 699 bp
ATGGGGGAACAGGAAAAGGTGACGATAATGATTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTACAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCCGAGAAGCCCAAGCCAAAGGAGCCGGAGAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCCAAAGAGCCCGAGAAACCTAAAGAGAAACCCAAAGAGCCCGAGAAGCAGAAGGAAGCTCCACCTGTGGTGATGGTTAACCCGTGTTGTATGGAATGTTACGGAGGGCATCCTGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGACCTGGCCCTTACATAGAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAACTATGCTACTAGTTACTGTGTGACCCGCCCAGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

232

Amino Acids

26.42

Weight (kDa)

8.78

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 612, 649
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 119, 572
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 3 cut(s) 135, 514, 553
AluBI AGCT 2 cut(s) 187, 461
AluI AGCT 2 cut(s) 187, 461
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 3 cut(s) 236, 413, 443
AoxI GGCC 2 cut(s) 556, 590
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 209, 689
AspS9I GGNCC 4 cut(s) 43, 521, 551, 557
AsuHPI GGTGA 3 cut(s) 31, 151, 484
AvaI CYCGRG 3 cut(s) 236, 413, 443
AvaII GGWCC 3 cut(s) 43, 521, 551
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 414, 444
BbvI GCAGC 1 cut(s) 146
BccI CCATC 3 cut(s) 469, 569, 698
BceAI ACGGC 1 cut(s) 625
BciT130I CCWGG 3 cut(s) 137, 516, 555
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 137, 516, 555
Bme18I GGWCC 3 cut(s) 43, 521, 551
BmeT110I CYCGRG 3 cut(s) 236, 413, 443
BmgT120I GGNCC 4 cut(s) 43, 521, 551, 557
BmiI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 523
BmrFI CCNGG 3 cut(s) 137, 516, 555
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 228, 520
BmuI ACTGGG 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 3 cut(s) 137, 516, 555
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 511
BseNI ACTGG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 558, 592
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 3 cut(s) 236, 413, 443
BsiSI CCGG 6 cut(s) 260, 293, 323, 353, 383, 593
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 194, 507
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 194, 507
BsnI GGCC 2 cut(s) 558, 592
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 3 cut(s) 236, 413, 443
Bsp1286I GDGCHC 3 cut(s) 237, 414, 444
Bsp143I GATC 4 cut(s) 141, 174, 225, 274
BspACI CCGC 2 cut(s) 612, 649
BspANI GGCC 2 cut(s) 558, 592
BspLI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 523
BspMAI CTGCAG 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 1 cut(s) 538
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 4 cut(s) 141, 174, 225, 274
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 3 cut(s) 137, 516, 555
Bst4CI ACNGT 2 cut(s) 548, 641
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 685
BstF5I GGATG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 689
BstKTI GATC 4 cut(s) 144, 177, 228, 277
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 141, 174, 225, 274
BstMWI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 448
BstNI CCWGG 3 cut(s) 137, 516, 555
BstSCI CCNGG 3 cut(s) 135, 514, 553
BstSFI CTRYAG 2 cut(s) 64, 160
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 558, 592
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 56, 670
Cac8I GCNNGC 1 cut(s) 685
CfoI GCGC 2 cut(s) 209, 689
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 4 cut(s) 43, 521, 551, 557
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 118, 571
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 694
CviQI GTAC 2 cut(s) 118, 571
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 143, 176, 227, 276
DpnII GATC 4 cut(s) 141, 174, 225, 274
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 414, 444
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 43, 521, 551
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 3 cut(s) 236, 413, 443
EcoRII CCWGG 3 cut(s) 135, 514, 553
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 414, 444
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 697
FaiI YATR 8 cut(s) 190, 494, 540, 566, 585, 600, 627, 695
FaqI GGGAC 2 cut(s) 194, 507
FatI CATG 1 cut(s) 693
FauI CCCGC 1 cut(s) 656
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 498
FriOI GRGCYC 2 cut(s) 414, 444
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 633
GlaI GCGC 2 cut(s) 208, 688
GluI GCNGC 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 558, 592
HapII CCGG 6 cut(s) 260, 293, 323, 353, 383, 593
HhaI GCGC 2 cut(s) 209, 689
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 697
Hin6I GCGC 2 cut(s) 207, 687
HinP1I GCGC 2 cut(s) 207, 687
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 6 cut(s) 260, 293, 323, 353, 383, 593
HphI GGTGA 3 cut(s) 31, 151, 484
Hpy166II GTNNAC 3 cut(s) 43, 481, 551
Hpy188I TCNGA 2 cut(s) 36, 279
Hpy188III TCNNGA 3 cut(s) 76, 167, 223
Hpy8I GTNNAC 3 cut(s) 43, 481, 551
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 31, 56, 64, 448, 582
HpyCH4III ACNGT 2 cut(s) 548, 641
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 448
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 697
HspAI GCGC 2 cut(s) 207, 687
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 4 cut(s) 141, 174, 225, 274
LmnI GCTCC 6 cut(s) 256, 289, 319, 349, 379, 466
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 228, 520
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 6 cut(s) 19, 500, 542, 605, 635, 643
MalI GATC 4 cut(s) 143, 176, 227, 276
MboI GATC 4 cut(s) 141, 174, 225, 274
MboII GAAGA 2 cut(s) 139, 680
MhlI GDGCHC 3 cut(s) 237, 414, 444
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 4 cut(s) 108, 194, 500, 612
MseI TTAA 2 cut(s) 213, 480
MslI CAYNNNNRTG 2 cut(s) 149, 516
MspI CCGG 6 cut(s) 260, 293, 323, 353, 383, 593
MspR9I CCNGG 3 cut(s) 137, 516, 555
MvaI CCWGG 3 cut(s) 137, 516, 555
MwoI GCNNNNNNNGC 9 cut(s) 241, 256, 265, 298, 328, 358, 367, 388, 448
NarI GGCGCC 1 cut(s) 207
NdeII GATC 4 cut(s) 141, 174, 225, 274
NlaIII CATG 1 cut(s) 697
NlaIV GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 523
NmuCI GTSAC 2 cut(s) 19, 643
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 135, 514, 553
PspGI CCWGG 3 cut(s) 135, 514, 553
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 523
PspPI GGNCC 4 cut(s) 43, 521, 551, 557
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 2 cut(s) 119, 572
RsaNI GTAC 2 cut(s) 118, 571
RseI CAYNNNNRTG 2 cut(s) 149, 516
SaqAI TTAA 2 cut(s) 213, 480
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 4 cut(s) 141, 174, 225, 274
Sau96I GGNCC 4 cut(s) 43, 521, 551, 557
ScrFI CCNGG 3 cut(s) 137, 516, 555
SduI GDGCHC 3 cut(s) 237, 414, 444
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 2 cut(s) 228, 520
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 3 cut(s) 43, 521, 551
SmiMI CAYNNNNRTG 2 cut(s) 149, 516
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 612, 649
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 135, 514, 553
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 548, 641
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 213, 480
Tru9I TTAA 2 cut(s) 213, 480
TscAI CASTG 2 cut(s) 56, 670
TseFI GTSAC 2 cut(s) 19, 643
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 2 cut(s) 19, 643
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 56, 670
VpaK11BI GGWCC 3 cut(s) 43, 521, 551
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.