MD10G1338100.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
41400897 .. 41402038
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1338100.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGTGCTGAAGGTGGATCTTCAGTGTCACAAATGCTACAAGAAGGTCAAAAAAGTTCTTTGTAAATTCCCTCGAGAAATACGAGACCAGAAATACAACGAGAAGCAAAACCAAGTGGTGATCAAAGTGGTATGCTGCAATCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTGGGAGTGCCATCAAAAGCATCAAGATCAAGGAGCCCGAGAAGCCCAAAGATGACAACAAGCCCGAGACTAAAGGTGACAGCAAGCCCGAGACTAAAGGTGACAACAAGCATGAATGTGGCGGCAAGCCTAAATGTGACTGTAAGCCTAAATGTGATGACAAACCTAAATGTGACAACAAACCTAAATGTGACGGTAAGAAAGATCCTGTTGTGCCAGAGTGCCCACCGCCTGTACGAACATGTTGTATGGATTGTTGCCAGGGGCATGCAGGTGGCCCGTGCTGCAGTGGTTATGGCGGCAATAAAAAAGATGACTGCAAGCCTAATGATCCTGTTGTGCCAAAGTGCCCACCACCTGTCACAGTGTGTTGTATGGATTGTTGCCAGGGGCATGTAGGTGGGCCGTGCTGCAGTGGTTATGGCGGTAAAAAAAAAGATGATTGCAAGCCTAAAGATCTTGCTGTGCTAGGGTACCCAATGCCTGTCCGCACATGTTGTATGGATTGTTACCAGGGGCATGCAGATGGCCCGTGCTACAGTGGTTGTGGCGGCGGCCATGCTACAGTGGTTGTGGCGGGCGGCCATGCTACAATGGTTGTGGCGAGCGGCCCTGCTACAGTGGTTATGGCGGGCGGCCAGCCCCGTACATCCAATATGATGGTTACTATAGGAGGCCTGTGTATAACAGTTACGGCGGTGACAACATGGGGTATTGTGTTACTCACCCTGACTATTTCAGTGAAGAAAATCCCTCAGCTTGCCCAGTCATGTAAATCATCGATCATCTTGTTGGACCGTGACACCTTTTTCAATCTAGGGATAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

336

Amino Acids

35.89

Weight (kDa)

8.8

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 437
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 783
AclWI GGATC 3 cut(s) 24, 374, 500
AcoI YGGCCR 3 cut(s) 730, 757, 811
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AdeI CACNNNGTG 1 cut(s) 543
AfaI GTAC 3 cut(s) 411, 650, 823
AflIII ACRYGT 2 cut(s) 416, 668
AgsI TTSAA 1 cut(s) 988
AjnI CCWGG 3 cut(s) 435, 561, 687
AluBI AGCT 1 cut(s) 934
AluI AGCT 1 cut(s) 934
Alw26I GTCTC 3 cut(s) 78, 236, 260
AlwI GGATC 3 cut(s) 24, 374, 500
Ama87I CYCGRG 4 cut(s) 72, 212, 239, 263
AoxI GGCC 8 cut(s) 451, 578, 703, 730, 757, 784, 811, 850
ApeKI GCWGC 4 cut(s) 135, 168, 459, 585
ApoI RAATTY 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 648
AspS9I GGNCC 5 cut(s) 452, 578, 704, 785, 970
AsuHPI GGTGA 5 cut(s) 130, 263, 287, 886, 892
AvaI CYCGRG 4 cut(s) 72, 212, 239, 263
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 2 cut(s) 401, 527
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 4 cut(s) 122, 155, 446, 572
BccI CCATC 3 cut(s) 194, 695, 829
BceAI ACGGC 2 cut(s) 565, 885
BciT130I CCWGG 3 cut(s) 437, 563, 689
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 78, 236, 260
BfaI CTAG 2 cut(s) 644, 992
BfmI CTRYAG 6 cut(s) 460, 586, 712, 738, 792, 843
BfuAI ACCTGC 1 cut(s) 437
BglII AGATCT 1 cut(s) 631
Bme1390I CCNGG 3 cut(s) 437, 563, 689
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 4 cut(s) 72, 212, 239, 263
BmgT120I GGNCC 5 cut(s) 452, 578, 704, 785, 970
BmiI GGNNCC 2 cut(s) 210, 650
BmrFI CCNGG 3 cut(s) 437, 563, 689
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 934
Bpu10I CCTNAGC 1 cut(s) 930
Bsa29I ATCGAT 1 cut(s) 956
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 436, 562, 688
Bse1I ACTGG 1 cut(s) 940
BseBI CCWGG 3 cut(s) 437, 563, 689
BseCI ATCGAT 1 cut(s) 956
BseDI CCNNGG 3 cut(s) 436, 562, 688
BseGI GGATG 1 cut(s) 824
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 2 cut(s) 401, 527
BseXI GCAGC 4 cut(s) 122, 155, 446, 572
BshFI GGCC 8 cut(s) 453, 580, 705, 732, 759, 786, 813, 852
BshNI GGYRCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 956
BsiHKCI CYCGRG 4 cut(s) 72, 212, 239, 263
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 78, 236, 260
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 8 cut(s) 453, 580, 705, 732, 759, 786, 813, 852
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 4 cut(s) 72, 212, 239, 263
Bsp1286I GDGCHC 3 cut(s) 213, 401, 527
Bsp143I GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
BspANI GGCC 8 cut(s) 453, 580, 705, 732, 759, 786, 813, 852
BspCNI CTCAG 1 cut(s) 943
BspDI ATCGAT 1 cut(s) 956
BspLI GGNNCC 2 cut(s) 210, 650
BspMAI CTGCAG 2 cut(s) 464, 590
BspMI ACCTGC 1 cut(s) 437
BspPI GGATC 3 cut(s) 24, 374, 500
BspT107I GGYRCC 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 783
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 3 cut(s) 436, 562, 688
BssMI GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
Bst2UI CCWGG 3 cut(s) 437, 563, 689
Bst4CI ACNGT 8 cut(s) 317, 371, 541, 716, 742, 796, 865, 974
BstDEI CTNAG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 824
BstKTI GATC 7 cut(s) 19, 123, 204, 382, 508, 634, 960
BstMAI GTCTC 3 cut(s) 78, 236, 260
BstMBI GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
BstMWI GCNNNNNNNGC 2 cut(s) 217, 459
BstNI CCWGG 3 cut(s) 437, 563, 689
BstNSI RCATGY 5 cut(s) 420, 446, 572, 672, 698
BstSCI CCNGG 3 cut(s) 435, 561, 687
BstSFI CTRYAG 6 cut(s) 460, 586, 712, 738, 792, 843
BstSLI GKGCMC 2 cut(s) 401, 527
BstV1I GCAGC 4 cut(s) 122, 155, 446, 572
BstX2I RGATCY 3 cut(s) 16, 379, 631
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 3 cut(s) 16, 379, 631
Bsu15I ATCGAT 1 cut(s) 956
BsuRI GGCC 8 cut(s) 453, 580, 705, 732, 759, 786, 813, 852
BsuTUI ATCGAT 1 cut(s) 956
BtsCI GGATG 1 cut(s) 824
BtsI GCAGTG 2 cut(s) 469, 595
BtsIMutI CAGTG 8 cut(s) 29, 469, 546, 595, 721, 747, 801, 921
BveI ACCTGC 1 cut(s) 437
Cfr13I GGNCC 5 cut(s) 452, 578, 704, 785, 970
ClaI ATCGAT 1 cut(s) 956
Csp6I GTAC 3 cut(s) 410, 649, 822
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviQI GTAC 3 cut(s) 410, 649, 822
DdeI CTNAG 1 cut(s) 930
DpnI GATC 7 cut(s) 18, 122, 203, 381, 507, 633, 959
DpnII GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
DraIII CACNNNGTG 1 cut(s) 543
EaeI YGGCCR 3 cut(s) 730, 757, 811
Eco147I AGGCCT 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 970
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 4 cut(s) 72, 212, 239, 263
EcoRII CCWGG 3 cut(s) 435, 561, 687
EcoT38I GRGCYC 1 cut(s) 213
FaqI GGGAC 1 cut(s) 170
FauI CCCGC 2 cut(s) 745, 799
FbaI TGATCA 1 cut(s) 120
FokI GGATG 1 cut(s) 811
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 2 cut(s) 644, 992
HaeIII GGCC 8 cut(s) 453, 580, 705, 732, 759, 786, 813, 852
HphI GGTGA 5 cut(s) 130, 263, 287, 886, 892
Hpy188III TCNNGA 3 cut(s) 74, 143, 199
HpyAV CCTTC 2 cut(s) 4, 37
HpyCH4III ACNGT 8 cut(s) 317, 371, 541, 716, 742, 796, 865, 974
HpyCH4V TGCA 8 cut(s) 138, 171, 446, 462, 495, 588, 621, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 459
HpyF3I CTNAG 1 cut(s) 930
KpnI GGTACC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 4 cut(s) 122, 155, 446, 572
LweI GCATC 1 cut(s) 204
MaeI CTAG 2 cut(s) 644, 992
MalI GATC 7 cut(s) 18, 122, 203, 381, 507, 633, 959
MbiI CCGCTC 1 cut(s) 783
MboI GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
MboII GAAGA 2 cut(s) 11, 931
MflI RGATCY 3 cut(s) 16, 379, 631
MhlI GDGCHC 3 cut(s) 213, 401, 527
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 948
MnlI CCTC 3 cut(s) 81, 842, 939
MslI CAYNNNNRTG 4 cut(s) 291, 447, 573, 699
MspR9I CCNGG 3 cut(s) 437, 563, 689
MvaI CCWGG 3 cut(s) 437, 563, 689
MwoI GCNNNNNNNGC 2 cut(s) 217, 459
NdeII GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
NlaIV GGNNCC 2 cut(s) 210, 650
NmuCI GTSAC 9 cut(s) 26, 251, 275, 311, 347, 365, 535, 874, 974
NspI RCATGY 5 cut(s) 420, 446, 572, 672, 698
PaeI GCATGC 2 cut(s) 446, 698
PaeR7I CTCGAG 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 437
PceI AGGCCT 1 cut(s) 852
PciI ACATGT 2 cut(s) 416, 668
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PscI ACATGT 2 cut(s) 416, 668
Psp6I CCWGG 3 cut(s) 435, 561, 687
PspGI CCWGG 3 cut(s) 435, 561, 687
PspN4I GGNNCC 2 cut(s) 210, 650
PspPI GGNCC 5 cut(s) 452, 578, 704, 785, 970
PstI CTGCAG 2 cut(s) 464, 590
PsuI RGATCY 3 cut(s) 16, 379, 631
RsaI GTAC 3 cut(s) 411, 650, 823
RsaNI GTAC 3 cut(s) 410, 649, 822
RseI CAYNNNNRTG 4 cut(s) 291, 447, 573, 699
Sau3AI GATC 7 cut(s) 16, 120, 201, 379, 505, 631, 957
Sau96I GGNCC 5 cut(s) 452, 578, 704, 785, 970
ScrFI CCNGG 3 cut(s) 437, 563, 689
SduI GDGCHC 3 cut(s) 213, 401, 527
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 6 cut(s) 460, 586, 712, 738, 792, 843
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 970
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 4 cut(s) 291, 447, 573, 699
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SphI GCATGC 2 cut(s) 446, 698
Sse9I AATT 1 cut(s) 65
SseBI AGGCCT 1 cut(s) 852
SspI AATATT 1 cut(s) 1002
SspMI CTAG 2 cut(s) 644, 992
StuI AGGCCT 1 cut(s) 852
StyD4I CCNGG 3 cut(s) 435, 561, 687
TaaI ACNGT 8 cut(s) 317, 371, 541, 716, 742, 796, 865, 974
TaqI TCGA 2 cut(s) 73, 956
TasI AATT 1 cut(s) 65
TauI GCSGC 7 cut(s) 300, 477, 729, 732, 759, 786, 813
TscAI CASTG 8 cut(s) 29, 469, 546, 595, 721, 747, 801, 921
TseFI GTSAC 9 cut(s) 26, 251, 275, 311, 347, 365, 535, 874, 974
TseI GCWGC 4 cut(s) 135, 168, 459, 585
Tsp45I GTSAC 9 cut(s) 26, 251, 275, 311, 347, 365, 535, 874, 974
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 8 cut(s) 29, 469, 546, 595, 721, 747, 801, 921
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 1 cut(s) 65
XceI RCATGY 5 cut(s) 420, 446, 572, 672, 698
XhoI CTCGAG 1 cut(s) 72
XspI CTAG 2 cut(s) 644, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.