RLG00000028757

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000455
Physical Location & Seq
Forward (+)
27505946 .. 27507565
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028757

Sequence Viewer

Length: 705 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAAAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGGCGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAGGCCTCCTCCTCCTCCTCCGGCGCCGAAACCCGCTCCGGCTCCACCTCCGGAGCCGAAACCTGCTCCGGCTCCGAAACCTGCTCCGGCTCCACCTCCGGCTCCACCTCCGGCGCCTAAACCAGCTCCGGCTCCGGAGCCAAAACCTGCTCCGGTTCCTCCTTGCCGTCCGCGGCCGTGTTGTATGGATTGTTACTGTGGACGTGCCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

235

Amino Acids

25.47

Weight (kDa)

8.87

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 313, 331, 397
AccB1I GGYRCC 3 cut(s) 203, 265, 355
AccBSI CCGCTC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 415
AccIII TCCGGA 2 cut(s) 292, 376
AciI CCGC 5 cut(s) 276, 413, 415, 618, 655
AcoI YGGCCR 2 cut(s) 416, 479
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 4 cut(s) 204, 266, 356, 517
AfaI GTAC 2 cut(s) 116, 578
AfiI CCNNNNNNNGG 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 638
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 4 cut(s) 108, 132, 242, 520
AluBI AGCT 3 cut(s) 184, 368, 630
AluI AGCT 3 cut(s) 184, 368, 630
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 2 cut(s) 292, 376
AoxI GGCC 5 cut(s) 245, 416, 479, 557, 596
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 4 cut(s) 206, 268, 358, 695
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 28, 148, 496
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 3 cut(s) 203, 265, 355
BanII GRGCYC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 575, 704
BceAI ACGGC 3 cut(s) 393, 403, 631
BciT130I CCWGG 4 cut(s) 110, 134, 244, 522
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 2 cut(s) 61, 157
BfoI RGCGCY 3 cut(s) 207, 269, 359
BfuAI ACCTGC 3 cut(s) 313, 331, 397
BisI GCNGC 3 cut(s) 157, 190, 416
BlsI GCNGC 3 cut(s) 158, 191, 417
Bme1390I CCNGG 5 cut(s) 110, 134, 244, 452, 522
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 527
BmrFI CCNGG 5 cut(s) 110, 134, 244, 452, 522
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 452
BsaHI GRCGYC 4 cut(s) 204, 266, 356, 517
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 242, 413, 450, 476
BsaWI WCCGGW 4 cut(s) 292, 376, 394, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 2 cut(s) 481, 598
Bse1I ACTGG 1 cut(s) 544
BseAI TCCGGA 2 cut(s) 292, 376
BseBI CCWGG 4 cut(s) 110, 134, 244, 522
BseDI CCNNGG 4 cut(s) 242, 413, 450, 476
BseLI CCNNNNNNNGG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 5 cut(s) 240, 243, 246, 249, 640
BseSI GKGCMC 1 cut(s) 451
BseX3I CGGCCG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 5 cut(s) 247, 418, 481, 559, 598
BshNI GGYRCC 3 cut(s) 203, 265, 355
BsiEI CGRYCG 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 233
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 191, 513
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 191, 513
BsnI GGCC 5 cut(s) 247, 418, 481, 559, 598
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 234, 451
Bsp13I TCCGGA 2 cut(s) 292, 376
Bsp143I GATC 3 cut(s) 138, 171, 222
BspACI CCGC 5 cut(s) 276, 413, 415, 618, 655
BspANI GGCC 5 cut(s) 247, 418, 481, 559, 598
BspEI TCCGGA 2 cut(s) 292, 376
BspFNI CGCG 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 3 cut(s) 313, 331, 397
BspT107I GGYRCC 3 cut(s) 203, 265, 355
BspTNI GGTCTC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 278
BsrFI RCCGGY 2 cut(s) 481, 598
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 2 cut(s) 481, 598
BssECI CCNNGG 4 cut(s) 242, 413, 450, 476
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 4 cut(s) 204, 266, 356, 517
Bst2UI CCWGG 4 cut(s) 110, 134, 244, 522
Bst4CI ACNGT 3 cut(s) 440, 554, 576
BstACI GRCGYC 4 cut(s) 204, 266, 356, 517
BstC8I GCNNGC 3 cut(s) 469, 561, 691
BstDSI CCRYGG 2 cut(s) 413, 476
BstFNI CGCG 1 cut(s) 415
BstH2I RGCGCY 3 cut(s) 207, 269, 359
BstHHI GCGC 4 cut(s) 206, 268, 358, 695
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 238, 654
BstNI CCWGG 4 cut(s) 110, 134, 244, 522
BstSCI CCNGG 5 cut(s) 108, 132, 242, 450, 520
BstSFI CTRYAG 2 cut(s) 61, 157
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 1 cut(s) 416
BsuRI GGCC 5 cut(s) 247, 418, 481, 559, 598
BtgI CCRYGG 2 cut(s) 413, 476
BtrI CACGTC 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 53
BveI ACCTGC 3 cut(s) 313, 331, 397
Cac8I GCNNGC 3 cut(s) 469, 561, 691
CfoI GCGC 4 cut(s) 206, 268, 358, 695
Cfr10I RCCGGY 2 cut(s) 481, 598
Cfr13I GGNCC 1 cut(s) 527
Cfr42I CCGCGG 1 cut(s) 416
CseI GACGC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 115, 577
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 700
CviQI GTAC 2 cut(s) 115, 577
DinI GGCGCC 3 cut(s) 205, 267, 357
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 2 cut(s) 416, 479
EagI CGGCCG 1 cut(s) 416
EclXI CGGCCG 1 cut(s) 416
Eco147I AGGCCT 2 cut(s) 247, 559
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 527
Eco52I CGGCCG 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 108, 132, 242, 520
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 3 cut(s) 205, 267, 357
EheI GGCGCC 3 cut(s) 205, 267, 357
FaeI CATG 1 cut(s) 703
FaqI GGGAC 2 cut(s) 191, 513
FatI CATG 1 cut(s) 699
FauI CCCGC 2 cut(s) 283, 662
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 157, 190, 416
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 157, 190, 416
FspBI CTAG 1 cut(s) 639
GlaI GCGC 4 cut(s) 205, 267, 357, 694
GluI GCNGC 3 cut(s) 157, 190, 416
HaeII RGCGCY 3 cut(s) 207, 269, 359
HaeIII GGCC 5 cut(s) 247, 418, 481, 559, 598
HgaI GACGC 1 cut(s) 506
HhaI GCGC 4 cut(s) 206, 268, 358, 695
Hin1I GRCGYC 4 cut(s) 204, 266, 356, 517
Hin1II CATG 1 cut(s) 703
Hin6I GCGC 4 cut(s) 204, 266, 356, 693
HinP1I GCGC 4 cut(s) 204, 266, 356, 693
HinfI GANTC 1 cut(s) 28
HphI GGTGA 3 cut(s) 28, 148, 496
Hpy166II GTNNAC 3 cut(s) 40, 443, 487
Hpy188I TCNGA 3 cut(s) 33, 318, 671
Hpy188III TCNNGA 4 cut(s) 164, 220, 293, 377
Hpy8I GTNNAC 3 cut(s) 40, 443, 487
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 7, 28, 53, 61, 506, 588
HpyCH4III ACNGT 3 cut(s) 440, 554, 576
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 654
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 4 cut(s) 204, 266, 356, 517
Hsp92II CATG 1 cut(s) 703
HspAI GCGC 4 cut(s) 204, 266, 356, 693
KasI GGCGCC 3 cut(s) 203, 265, 355
Kpn2I TCCGGA 2 cut(s) 292, 376
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 416
Kzo9I GATC 3 cut(s) 138, 171, 222
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 7 cut(s) 16, 434, 506, 548, 611, 641, 649
MalI GATC 3 cut(s) 140, 173, 224
MbiI CCGCTC 1 cut(s) 278
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 686
MhlI GDGCHC 2 cut(s) 234, 451
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 3 cut(s) 204, 266, 356
MroI TCCGGA 2 cut(s) 292, 376
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 415
MspR9I CCNGG 5 cut(s) 110, 134, 244, 452, 522
MvaI CCWGG 4 cut(s) 110, 134, 244, 522
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 238, 654
NarI GGCGCC 3 cut(s) 204, 266, 356
NciI CCSGG 1 cut(s) 452
NdeII GATC 3 cut(s) 138, 171, 222
NlaIII CATG 1 cut(s) 703
NmuCI GTSAC 2 cut(s) 16, 649
PceI AGGCCT 2 cut(s) 247, 559
PfeI GAWTC 1 cut(s) 28
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 3 cut(s) 158, 191, 417
PluTI GGCGCC 3 cut(s) 207, 269, 359
Psp6I CCWGG 4 cut(s) 108, 132, 242, 520
PspGI CCWGG 4 cut(s) 108, 132, 242, 520
PspLI CGTACG 1 cut(s) 114
PspPI GGNCC 1 cut(s) 527
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 116, 578
RsaNI GTAC 2 cut(s) 115, 577
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 157, 190, 416
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 1 cut(s) 527
ScrFI CCNGG 5 cut(s) 110, 134, 244, 452, 522
SduI GDGCHC 2 cut(s) 234, 451
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
SfoI GGCGCC 3 cut(s) 205, 267, 357
Sfr303I CCGCGG 1 cut(s) 416
SgrBI CCGCGG 1 cut(s) 416
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 638
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 2 cut(s) 247, 559
SsiI CCGC 5 cut(s) 276, 413, 415, 618, 655
SspDI GGCGCC 3 cut(s) 203, 265, 355
SspMI CTAG 1 cut(s) 639
StuI AGGCCT 2 cut(s) 247, 559
StyD4I CCNGG 5 cut(s) 108, 132, 242, 450, 520
TaaI ACNGT 3 cut(s) 440, 554, 576
TaiI ACGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 2 cut(s) 16, 649
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 649
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.