Rh1CG189000

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000455
Physical Location & Seq
Reverse (-)
41190125 .. 41191689
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG189000.1

Sequence Viewer

Length: 750 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAAAAAGTTCTCTGTAAATTCCCTGAAATACGAGACCAGGCGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGATGCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAGGCCTCCTCCTCCGGCGCCGAAACCCGCTCCGGCTCCACCTCCGGAGCCGAAACCTGCTCCGGCTCCACCTCCGGCTCCGAAACCTGCTCCGGCTCCACCTCCGGCGCCTAAACCAGCTCCAGCTCCGGAGCCAAAACCTGCTCCGGTTCCTCCTTGCTGTCCGCGGCCTGTGAAGCCGTGTTGTATGGATTGTTACGAAGGGCGTCGTGGTGGACCTTGTGAGACTGGGTATGGTTGCGGTGGGCGTGCCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

249

Amino Acids

26.96

Weight (kDa)

8.74

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 307, 337, 391
AccB1I GGYRCC 2 cut(s) 259, 349
AccBSI CCGCTC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 409
AccIII TCCGGA 2 cut(s) 286, 370
AciI CCGC 6 cut(s) 270, 407, 409, 483, 663, 700
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 4 cut(s) 260, 350, 448, 562
AfaI GTAC 2 cut(s) 116, 623
AfiI CCNNNNNNNGG 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 683
AjnI CCWGG 4 cut(s) 108, 132, 242, 565
AluBI AGCT 4 cut(s) 184, 362, 368, 675
AluI AGCT 4 cut(s) 184, 362, 368, 675
Alw26I GTCTC 2 cut(s) 99, 461
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 2 cut(s) 286, 370
AoxI GGCC 5 cut(s) 245, 410, 524, 602, 641
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 3 cut(s) 262, 352, 740
AspS9I GGNCC 2 cut(s) 458, 572
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 28, 148, 541
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 458, 572
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 2 cut(s) 259, 349
BanII GRGCYC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 620, 749
BceAI ACGGC 2 cut(s) 406, 676
BciT130I CCWGG 4 cut(s) 110, 134, 244, 567
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 99, 461
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 61, 157
BfoI RGCGCY 2 cut(s) 263, 353
BfuAI ACCTGC 3 cut(s) 307, 337, 391
BisI GCNGC 3 cut(s) 157, 190, 410
BlsI GCNGC 3 cut(s) 158, 191, 411
Bme1390I CCNGG 5 cut(s) 110, 134, 244, 497, 567
Bme18I GGWCC 2 cut(s) 458, 572
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 458, 572
BmrFI CCNGG 5 cut(s) 110, 134, 244, 497, 567
BmrI ACTGGG 2 cut(s) 480, 594
BmsI GCATC 2 cut(s) 194, 225
BmuI ACTGGG 2 cut(s) 480, 594
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 4 cut(s) 260, 350, 448, 562
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 242, 407, 495, 521
BsaWI WCCGGW 4 cut(s) 286, 370, 388, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 2 cut(s) 526, 643
Bse1I ACTGG 2 cut(s) 475, 589
BseAI TCCGGA 2 cut(s) 286, 370
BseBI CCWGG 4 cut(s) 110, 134, 244, 567
BseDI CCNNGG 4 cut(s) 242, 407, 495, 521
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 502
BseNI ACTGG 2 cut(s) 475, 589
BseRI GAGGAG 3 cut(s) 240, 243, 685
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 5 cut(s) 247, 412, 526, 604, 643
BshNI GGYRCC 2 cut(s) 259, 349
BsiHKCI CYCGRG 1 cut(s) 233
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 191, 558
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 99, 461
BsmFI GGGAC 2 cut(s) 191, 558
BsnI GGCC 5 cut(s) 247, 412, 526, 604, 643
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 234, 496
Bsp13I TCCGGA 2 cut(s) 286, 370
Bsp143I GATC 3 cut(s) 138, 171, 222
BspACI CCGC 6 cut(s) 270, 407, 409, 483, 663, 700
BspANI GGCC 5 cut(s) 247, 412, 526, 604, 643
BspEI TCCGGA 2 cut(s) 286, 370
BspFNI CGCG 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 3 cut(s) 307, 337, 391
BspT107I GGYRCC 2 cut(s) 259, 349
BspTNI GGTCTC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 272
BsrFI RCCGGY 2 cut(s) 526, 643
BsrI ACTGG 2 cut(s) 475, 589
BssAI RCCGGY 2 cut(s) 526, 643
BssECI CCNNGG 4 cut(s) 242, 407, 495, 521
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 4 cut(s) 260, 350, 448, 562
Bst2UI CCWGG 4 cut(s) 110, 134, 244, 567
Bst4CI ACNGT 2 cut(s) 599, 621
BstACI GRCGYC 4 cut(s) 260, 350, 448, 562
BstC8I GCNNGC 4 cut(s) 492, 514, 606, 736
BstDSI CCRYGG 2 cut(s) 407, 521
BstF5I GGATG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 409
BstH2I RGCGCY 2 cut(s) 263, 353
BstHHI GCGC 3 cut(s) 262, 352, 740
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 2 cut(s) 99, 461
BstMBI GATC 3 cut(s) 138, 171, 222
BstMWI GCNNNNNNNGC 4 cut(s) 213, 238, 418, 699
BstNI CCWGG 4 cut(s) 110, 134, 244, 567
BstSCI CCNGG 5 cut(s) 108, 132, 242, 495, 565
BstSFI CTRYAG 2 cut(s) 61, 157
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 143, 176
BsuRI GGCC 5 cut(s) 247, 412, 526, 604, 643
BtgI CCRYGG 2 cut(s) 407, 521
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 53
BveI ACCTGC 3 cut(s) 307, 337, 391
Cac8I GCNNGC 4 cut(s) 492, 514, 606, 736
CfoI GCGC 3 cut(s) 262, 352, 740
Cfr10I RCCGGY 2 cut(s) 526, 643
Cfr13I GGNCC 2 cut(s) 458, 572
Cfr42I CCGCGG 1 cut(s) 410
CseI GACGC 2 cut(s) 437, 551
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 115, 622
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 745
CviQI GTAC 2 cut(s) 115, 622
DinI GGCGCC 2 cut(s) 261, 351
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 1 cut(s) 524
Eco147I AGGCCT 2 cut(s) 247, 604
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 458, 572
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 108, 132, 242, 565
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 2 cut(s) 261, 351
EheI GGCGCC 2 cut(s) 261, 351
FaeI CATG 1 cut(s) 748
FaqI GGGAC 2 cut(s) 191, 558
FatI CATG 1 cut(s) 744
FauI CCCGC 2 cut(s) 277, 707
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 157, 190, 410
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 157, 190, 410
FspBI CTAG 1 cut(s) 684
GlaI GCGC 3 cut(s) 261, 351, 739
GluI GCNGC 3 cut(s) 157, 190, 410
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 2 cut(s) 263, 353
HaeIII GGCC 5 cut(s) 247, 412, 526, 604, 643
HgaI GACGC 2 cut(s) 437, 551
HhaI GCGC 3 cut(s) 262, 352, 740
Hin1I GRCGYC 4 cut(s) 260, 350, 448, 562
Hin1II CATG 1 cut(s) 748
Hin6I GCGC 3 cut(s) 260, 350, 738
HinP1I GCGC 3 cut(s) 260, 350, 738
HinfI GANTC 1 cut(s) 28
HphI GGTGA 3 cut(s) 28, 148, 541
Hpy166II GTNNAC 3 cut(s) 40, 458, 532
Hpy188I TCNGA 3 cut(s) 33, 324, 716
Hpy188III TCNNGA 4 cut(s) 164, 220, 287, 371
Hpy8I GTNNAC 3 cut(s) 40, 458, 532
Hpy99I CGWCG 2 cut(s) 122, 453
HpyAV CCTTC 7 cut(s) 7, 28, 53, 61, 437, 551, 633
HpyCH4III ACNGT 2 cut(s) 599, 621
HpyCH4V TGCA 3 cut(s) 159, 192, 207
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 238, 418, 699
Hsp92I GRCGYC 4 cut(s) 260, 350, 448, 562
Hsp92II CATG 1 cut(s) 748
HspAI GCGC 3 cut(s) 260, 350, 738
KasI GGCGCC 2 cut(s) 259, 349
Kpn2I TCCGGA 2 cut(s) 286, 370
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 3 cut(s) 138, 171, 222
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 2 cut(s) 194, 225
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 684
MaeIII GTNAC 7 cut(s) 16, 437, 551, 593, 656, 686, 694
MalI GATC 3 cut(s) 140, 173, 224
MbiI CCGCTC 1 cut(s) 272
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 731
MhlI GDGCHC 2 cut(s) 234, 496
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 2 cut(s) 260, 350
Mph1103I ATGCAT 1 cut(s) 209
MroI TCCGGA 2 cut(s) 286, 370
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 5 cut(s) 110, 134, 244, 497, 567
MvaI CCWGG 4 cut(s) 110, 134, 244, 567
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 4 cut(s) 213, 238, 418, 699
NarI GGCGCC 2 cut(s) 260, 350
NciI CCSGG 1 cut(s) 497
NdeII GATC 3 cut(s) 138, 171, 222
NlaIII CATG 1 cut(s) 748
NmuCI GTSAC 2 cut(s) 16, 694
NsiI ATGCAT 1 cut(s) 209
PceI AGGCCT 2 cut(s) 247, 604
PfeI GAWTC 1 cut(s) 28
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 3 cut(s) 158, 191, 411
PluTI GGCGCC 2 cut(s) 263, 353
Psp6I CCWGG 4 cut(s) 108, 132, 242, 565
PspGI CCWGG 4 cut(s) 108, 132, 242, 565
PspLI CGTACG 1 cut(s) 114
PspPI GGNCC 2 cut(s) 458, 572
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 116, 623
RsaNI GTAC 2 cut(s) 115, 622
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 157, 190, 410
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 2 cut(s) 458, 572
ScrFI CCNGG 5 cut(s) 110, 134, 244, 497, 567
SduI GDGCHC 2 cut(s) 234, 496
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 2 cut(s) 194, 225
SfcI CTRYAG 2 cut(s) 61, 157
SfoI GGCGCC 2 cut(s) 261, 351
Sfr303I CCGCGG 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 410
SinI GGWCC 2 cut(s) 458, 572
SmiMI CAYNNNNRTG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 2 cut(s) 247, 604
SsiI CCGC 6 cut(s) 270, 407, 409, 483, 663, 700
SspDI GGCGCC 2 cut(s) 259, 349
SspMI CTAG 1 cut(s) 684
StuI AGGCCT 2 cut(s) 247, 604
StyD4I CCNGG 5 cut(s) 108, 132, 242, 495, 565
TaaI ACNGT 2 cut(s) 599, 621
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 2 cut(s) 16, 694
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 694
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 458, 572
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 1 cut(s) 684
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.