Rmu_sc0004156.1_g000004

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004156.1
OG0000455
Physical Location & Seq
Reverse (-)
30639 .. 31235
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004156.1_g000004.1.cds

Sequence Viewer

Length: 597 bp
atgtacgacgagaagaacaaccaggtgatcatcaaagtggtctgctgctgtcccgaaaagatcagggacaagctatgctgcaaaggaggtggcgccattaagagcatcgagatcaaagagcccgagaagcccaagcctccttctccggctccgaaacctgctccggctccggctccgaaacctgctcccgctcctgctcctaaaccggctccggctccggcgggggtacctgcttgccctcggcggccggtgaacccgtgttgtatggattgttacggagggcgtcatggtggtccctgcgaaactgggtacggtgctccggttccacctcctgctccgaaaccttctccggctccggtgccggttcctccttgccgtccgcggccggtgaacccgtgttgtatggattgttacgaagggcgtcctggtggtccctgcgaaactgggtatggtaacagatggcctgccccttacacacagtacgatggctactatggaaggccggtctatgatagttacggcggtgggaggagttactgcgtgacccgcccccattgtttcagtgaagaaaatccccaagggtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

198

Amino Acids

21.0

Weight (kDa)

8.68

Isoelectric Point (pI)

80.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 166, 190, 238
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 3 cut(s) 92, 226, 358
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 1 cut(s) 382
AciI CCGC 7 cut(s) 189, 221, 244, 380, 382, 522, 547
AcoI YGGCCR 2 cut(s) 245, 383
AcyI GRCGYC 3 cut(s) 93, 283, 421
AfaI GTAC 4 cut(s) 5, 228, 311, 482
AjnI CCWGG 2 cut(s) 21, 424
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 245, 383, 461, 500
ApeKI GCWGC 2 cut(s) 45, 78
Asp718I GGTACC 1 cut(s) 226
AspLEI GCGC 2 cut(s) 95, 587
AspS9I GGNCC 2 cut(s) 293, 431
AsuHPI GGTGA 3 cut(s) 37, 262, 400
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 293, 431
BanI GGYRCC 3 cut(s) 92, 226, 358
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 32, 65
BccI CCATC 3 cut(s) 453, 479, 596
BceAI ACGGC 2 cut(s) 360, 535
BciT130I CCWGG 2 cut(s) 23, 426
BclI TGATCA 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 3 cut(s) 166, 190, 238
BisI GCNGC 4 cut(s) 46, 79, 245, 383
BlsI GCNGC 4 cut(s) 47, 80, 246, 384
Bme1390I CCNGG 2 cut(s) 23, 426
Bme18I GGWCC 2 cut(s) 293, 431
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 293, 431
BmrFI CCNGG 2 cut(s) 23, 426
BmrI ACTGGG 2 cut(s) 315, 453
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 2 cut(s) 315, 453
BsaHI GRCGYC 3 cut(s) 93, 283, 421
BsaJI CCNNGG 3 cut(s) 239, 380, 577
BsaWI WCCGGW 2 cut(s) 319, 355
Bse118I RCCGGY 5 cut(s) 205, 247, 361, 385, 502
Bse1I ACTGG 2 cut(s) 310, 448
BseBI CCWGG 2 cut(s) 23, 426
BseDI CCNNGG 3 cut(s) 239, 380, 577
BseNI ACTGG 2 cut(s) 310, 448
BseRI GAGGAG 1 cut(s) 544
BseX3I CGGCCG 2 cut(s) 245, 383
BseXI GCAGC 2 cut(s) 32, 65
Bsh1236I CGCG 1 cut(s) 382
Bsh1285I CGRYCG 2 cut(s) 248, 386
BshFI GGCC 4 cut(s) 247, 385, 463, 502
BshNI GGYRCC 3 cut(s) 92, 226, 358
BsiEI CGRYCG 2 cut(s) 248, 386
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 122
BslFI GGGAC 4 cut(s) 36, 80, 279, 417
BsmFI GGGAC 4 cut(s) 36, 80, 279, 417
BsnI GGCC 4 cut(s) 247, 385, 463, 502
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 123, 319
Bsp143I GATC 3 cut(s) 27, 60, 111
BspACI CCGC 7 cut(s) 189, 221, 244, 380, 382, 522, 547
BspANI GGCC 4 cut(s) 247, 385, 463, 502
BspFNI CGCG 1 cut(s) 382
BspMI ACCTGC 3 cut(s) 166, 190, 238
BspT107I GGYRCC 3 cut(s) 92, 226, 358
BsrBI CCGCTC 1 cut(s) 191
BsrFI RCCGGY 5 cut(s) 205, 247, 361, 385, 502
BsrI ACTGG 2 cut(s) 310, 448
BssAI RCCGGY 5 cut(s) 205, 247, 361, 385, 502
BssECI CCNNGG 3 cut(s) 239, 380, 577
BssMI GATC 3 cut(s) 27, 60, 111
BssNI GRCGYC 3 cut(s) 93, 283, 421
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 2 cut(s) 23, 426
Bst4CI ACNGT 2 cut(s) 314, 480
BstACI GRCGYC 3 cut(s) 93, 283, 421
BstC8I GCNNGC 2 cut(s) 235, 465
BstDSI CCRYGG 1 cut(s) 380
BstFNI CGCG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 587
BstKTI GATC 3 cut(s) 30, 63, 114
BstMBI GATC 3 cut(s) 27, 60, 111
BstMCI CGRYCG 2 cut(s) 248, 386
BstMWI GCNNNNNNNGC 2 cut(s) 127, 546
BstNI CCWGG 2 cut(s) 23, 426
BstSCI CCNGG 2 cut(s) 21, 424
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 32, 65
BstZI CGGCCG 2 cut(s) 245, 383
BsuRI GGCC 4 cut(s) 247, 385, 463, 502
BtgI CCRYGG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 3 cut(s) 166, 190, 238
Cac8I GCNNGC 2 cut(s) 235, 465
CfoI GCGC 2 cut(s) 95, 587
Cfr10I RCCGGY 5 cut(s) 205, 247, 361, 385, 502
Cfr13I GGNCC 2 cut(s) 293, 431
Cfr42I CCGCGG 1 cut(s) 383
CseI GACGC 2 cut(s) 272, 410
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 4 cut(s) 4, 227, 310, 481
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 287, 592
CviQI GTAC 4 cut(s) 4, 227, 310, 481
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 29, 62, 113
DpnII GATC 3 cut(s) 27, 60, 111
EaeI YGGCCR 2 cut(s) 245, 383
EagI CGGCCG 2 cut(s) 245, 383
EclXI CGGCCG 2 cut(s) 245, 383
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 293, 431
Eco52I CGGCCG 2 cut(s) 245, 383
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 21, 424
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 2 cut(s) 290, 595
FaiI YATR 8 cut(s) 76, 266, 288, 404, 450, 495, 510, 593
FaqI GGGAC 4 cut(s) 36, 80, 279, 417
FatI CATG 2 cut(s) 286, 591
FauI CCCGC 3 cut(s) 196, 214, 554
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 46, 79, 245, 383
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 46, 79, 245, 383
GlaI GCGC 2 cut(s) 94, 586
GluI GCNGC 4 cut(s) 46, 79, 245, 383
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 4 cut(s) 247, 385, 463, 502
HgaI GACGC 2 cut(s) 272, 410
HhaI GCGC 2 cut(s) 95, 587
Hin1I GRCGYC 3 cut(s) 93, 283, 421
Hin1II CATG 2 cut(s) 290, 595
Hin6I GCGC 2 cut(s) 93, 585
HinP1I GCGC 2 cut(s) 93, 585
HphI GGTGA 3 cut(s) 37, 262, 400
Hpy166II GTNNAC 2 cut(s) 253, 391
Hpy188I TCNGA 3 cut(s) 153, 177, 339
Hpy188III TCNNGA 2 cut(s) 53, 109
Hpy8I GTNNAC 2 cut(s) 253, 391
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 150, 354, 410, 492
HpyCH4III ACNGT 2 cut(s) 314, 480
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 546
Hsp92I GRCGYC 3 cut(s) 93, 283, 421
Hsp92II CATG 2 cut(s) 290, 595
HspAI GCGC 2 cut(s) 93, 585
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 27
KspI CCGCGG 1 cut(s) 383
Kzo9I GATC 3 cut(s) 27, 60, 111
Lsp1109I GCAGC 2 cut(s) 32, 65
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 21
MaeIII GTNAC 6 cut(s) 272, 410, 452, 515, 533, 541
MalI GATC 3 cut(s) 29, 62, 113
MbiI CCGCTC 1 cut(s) 191
MboI GATC 3 cut(s) 27, 60, 111
MboII GAAGA 2 cut(s) 25, 578
MhlI GDGCHC 2 cut(s) 123, 319
Mly113I GGCGCC 1 cut(s) 93
MnlI CCTC 7 cut(s) 80, 147, 249, 272, 339, 378, 522
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 23, 426
MvaI CCWGG 2 cut(s) 23, 426
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 127, 546
NarI GGCGCC 1 cut(s) 93
NdeII GATC 3 cut(s) 27, 60, 111
NlaIII CATG 2 cut(s) 290, 595
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 541
PkrI GCNGC 4 cut(s) 47, 80, 246, 384
PluTI GGCGCC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 21, 424
PspGI CCWGG 2 cut(s) 21, 424
PspPI GGNCC 2 cut(s) 293, 431
RsaI GTAC 4 cut(s) 5, 228, 311, 482
RsaNI GTAC 4 cut(s) 4, 227, 310, 481
RseI CAYNNNNRTG 1 cut(s) 35
SacII CCGCGG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 46, 79, 245, 383
Sau3AI GATC 3 cut(s) 27, 60, 111
Sau96I GGNCC 2 cut(s) 293, 431
ScrFI CCNGG 2 cut(s) 23, 426
SduI GDGCHC 2 cut(s) 123, 319
SetI ASST 8 cut(s) 27, 75, 91, 160, 184, 232, 331, 346
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 383
SgrBI CCGCGG 1 cut(s) 383
SinI GGWCC 2 cut(s) 293, 431
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 7 cut(s) 189, 221, 244, 380, 382, 522, 547
SspDI GGCGCC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 21, 424
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 2 cut(s) 314, 480
TaqI TCGA 1 cut(s) 108
TauI GCSGC 2 cut(s) 247, 385
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 45, 78
Tsp45I GTSAC 1 cut(s) 541
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 293, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.