pycom10g28690

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
29185840 .. 29187014
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28690.1

Sequence Viewer

Length: 612 bp
ATGGGGGAAAAGGAAAAGGTTACGATTATGGTGCTGAAGGTGGATCTTCAGTGTCACAAATGCTACAAGAAGGTCAAAAAAGTTCTTTGTAAATTCCCTCAAATACGAGACCAGATATACGACGAGAAGCAAAACCAAGTGGTGATCAAAGTGGTATGCTGTAGTCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTAGATGTGTCATAAAAAGCATCGATCGATCAAAGAGCCAGAGAAGCCCAAGCCACCGGCTGAAAAACCCAAGCCACCACCGGCTGAGAAACCCAAAGAGCCTGAAAAACCTAAGCCTTGTCCTCCTCCTATGCATCCGGTTCCTTGTGTGCCAGGGTACCCACCGCCTGTCCGAACGTGTTGTACGGATTGTTACCATGGGCATGCAGGTGGGCCGTGTTACAGTGGTTATGGCCGGGGGCCACCCCCGTGCATCCAGTATGATGGTTACTATGGGAGGCCTGTGTATGACAGTTACAGCGGTTGCAGCAGGGGGTATTGTGAAGAAAATCCCTCAGTTTGCACAGTCATGTAAATCATCGATCATCTTATTGGATCGAGAAACCTTCTTCAATCTCGGGATAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

204

Amino Acids

22.87

Weight (kDa)

10.06

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 397
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 2 cut(s) 364, 500
AclWI GGATC 2 cut(s) 51, 582
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AfaI GTAC 2 cut(s) 358, 384
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 1 cut(s) 592
AjnI CCWGG 1 cut(s) 351
AleI CACNNNNGTG 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 51, 582
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 4 cut(s) 412, 432, 439, 478
ApeKI GCWGC 2 cut(s) 192, 506
ApoI RAATTY 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 412, 439
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 596
BanI GGYRCC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 179, 518
BccI CCATC 1 cut(s) 457
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 144
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 2 cut(s) 193, 507
BlsI GCNGC 2 cut(s) 194, 508
Bme1390I CCNGG 2 cut(s) 353, 436
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 412, 439
BmiI GGNNCC 3 cut(s) 341, 358, 440
BmrFI CCNGG 2 cut(s) 353, 436
BmsI GCATC 3 cut(s) 228, 342, 461
Bpu10I CCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 436
Bsa29I ATCGAT 3 cut(s) 222, 226, 560
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 352, 396, 435
BsaWI WCCGGW 1 cut(s) 336
Bse118I RCCGGY 2 cut(s) 255, 279
Bse1I ACTGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 3 cut(s) 222, 226, 560
BseDI CCNNGG 3 cut(s) 352, 396, 435
BseGI GGATG 2 cut(s) 333, 452
BseMII CTCAG 2 cut(s) 275, 548
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 179, 518
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 4 cut(s) 414, 434, 441, 480
BshNI GGYRCC 1 cut(s) 356
BshVI ATCGAT 3 cut(s) 222, 226, 560
BsiEI CGRYCG 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 4 cut(s) 256, 280, 337, 435
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 4 cut(s) 414, 434, 441, 480
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 596
Bsp143I GATC 6 cut(s) 43, 144, 223, 227, 561, 574
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 364, 500
BspANI GGCC 4 cut(s) 414, 434, 441, 480
BspCNI CTCAG 2 cut(s) 276, 547
BspDI ATCGAT 3 cut(s) 222, 226, 560
BspLI GGNNCC 3 cut(s) 341, 358, 440
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 2 cut(s) 51, 582
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 2 cut(s) 255, 279
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 2 cut(s) 255, 279
BssECI CCNNGG 3 cut(s) 352, 396, 435
BssMI GATC 6 cut(s) 43, 144, 223, 227, 561, 574
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 424, 493, 546
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 284, 311, 534
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 333, 452
BstKTI GATC 6 cut(s) 46, 147, 226, 230, 564, 577
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 6 cut(s) 43, 144, 223, 227, 561, 574
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 243, 506
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 351, 434
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 179, 518
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 3 cut(s) 222, 226, 560
BsuRI GGCC 4 cut(s) 414, 434, 441, 480
BsuTUI ATCGAT 3 cut(s) 222, 226, 560
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 333, 452
BtsIMutI CAGTG 2 cut(s) 56, 429
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 404
Cfr10I RCCGGY 2 cut(s) 255, 279
Cfr13I GGNCC 2 cut(s) 412, 439
ClaI ATCGAT 3 cut(s) 222, 226, 560
Csp6I GTAC 2 cut(s) 357, 383
CviAII CATG 3 cut(s) 397, 403, 549
CviQI GTAC 2 cut(s) 357, 383
DdeI CTNAG 3 cut(s) 284, 311, 534
DpnI GATC 6 cut(s) 45, 146, 225, 229, 563, 576
DpnII GATC 6 cut(s) 43, 144, 223, 227, 561, 574
EaeI YGGCCR 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 102
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 400, 406, 552
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 396, 402, 548
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 193, 507
FokI GGATG 2 cut(s) 320, 439
Fsp4HI GCNGC 2 cut(s) 193, 507
GluI GCNGC 2 cut(s) 193, 507
HaeIII GGCC 4 cut(s) 414, 434, 441, 480
HapII CCGG 4 cut(s) 256, 280, 337, 435
Hin1II CATG 3 cut(s) 400, 406, 552
HpaII CCGG 4 cut(s) 256, 280, 337, 435
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 3 cut(s) 167, 578, 598
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 31, 64, 595
HpyCH4III ACNGT 3 cut(s) 424, 493, 546
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 6 cut(s) 195, 333, 406, 452, 506, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 506
HpyF3I CTNAG 3 cut(s) 284, 311, 534
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 3 cut(s) 400, 406, 552
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 43, 144, 223, 227, 561, 574
Lsp1109I GCAGC 2 cut(s) 179, 518
LweI GCATC 3 cut(s) 228, 342, 461
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 6 cut(s) 19, 53, 391, 418, 466, 493
MalI GATC 6 cut(s) 45, 146, 225, 229, 563, 576
MboI GATC 6 cut(s) 43, 144, 223, 227, 561, 574
MboII GAAGA 3 cut(s) 38, 535, 580
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 92
MnlI CCTC 5 cut(s) 108, 332, 335, 470, 543
Mph1103I ATGCAT 1 cut(s) 335
MslI CAYNNNNRTG 4 cut(s) 401, 407, 447, 547
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 256, 280, 337, 435
MspR9I CCNGG 2 cut(s) 353, 436
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 243, 506
NciI CCSGG 1 cut(s) 436
NcoI CCATGG 1 cut(s) 396
NdeII GATC 6 cut(s) 43, 144, 223, 227, 561, 574
NlaIII CATG 3 cut(s) 400, 406, 552
NlaIV GGNNCC 3 cut(s) 341, 358, 440
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 447
PaeI GCATGC 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 397
PceI AGGCCT 1 cut(s) 480
PkrI GCNGC 2 cut(s) 194, 508
Ple19I CGATCG 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 341, 358, 440
PspPI GGNCC 2 cut(s) 412, 439
PsrI GAACNNNNNNTAC 2 cut(s) 366, 398
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 226
RsaI GTAC 2 cut(s) 358, 384
RsaNI GTAC 2 cut(s) 357, 383
RseI CAYNNNNRTG 4 cut(s) 401, 407, 447, 547
SatI GCNGC 2 cut(s) 193, 507
Sau3AI GATC 6 cut(s) 43, 144, 223, 227, 561, 574
Sau96I GGNCC 2 cut(s) 412, 439
ScrFI CCNGG 2 cut(s) 353, 436
SetI ASST 8 cut(s) 21, 42, 75, 202, 312, 379, 411, 587
SfaNI GCATC 3 cut(s) 228, 342, 461
SfcI CTRYAG 1 cut(s) 160
SmiMI CAYNNNNRTG 4 cut(s) 401, 407, 447, 547
SphI GCATGC 1 cut(s) 406
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 2 cut(s) 364, 500
SspI AATATT 1 cut(s) 606
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 351, 434
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 424, 493, 546
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 222, 226, 560, 577
TasI AATT 1 cut(s) 92
TscAI CASTG 2 cut(s) 56, 429
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 192, 506
Tsp45I GTSAC 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 2 cut(s) 56, 429
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.