RchiOBHm_Chr2g0102091

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000455
Physical Location & Seq
Forward (+)
13524176 .. 13525963
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47658

Sequence Viewer

Length: 894 bp
ATGGGGGAAAAGAAGGTGACTACAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGCAAGTTCTCTGTAAATTCCCACAAATACGAGACCAGAGGTACGACGAGAAGAAGAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCCGCAAAGGAGGTGGCGTCATTAAGTGGATCGAGATCGAAGAGCCTCCGCCTCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCTCCTCCCCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCACCTCCTCCTCCTCCGATTGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGTCTCCTTGCCGTTGCCGTTGCCGTTGCGGTTGCGGTTGCCGCCCTGTGAAACCGTGTTGTTGGGATTGTTACGAAGGGCTTCCTGGTGGTCCCTGCGAAACGTTCCCTCGGCGGCCGGTGAAACCGTGTTGCTCGGATTGTCGCGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAAAACGTGTTGTACGGATTGTTACGAAGGTCGTCCCGGCGGTCCCTGCGAAACTTACCGTCCGCGGCCGGTGGACACGTGTTGTACGGATTGTGAGGAAGGTCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGAGGGCTTGTCCCTTACATACAGTATGATGGCCACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCAGTACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

297

Amino Acids

32.9

Weight (kDa)

8.32

Isoelectric Point (pI)

76.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 555, 667
AclI AACGTT 1 cut(s) 512
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 4 cut(s) 524, 596, 668, 772
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 1 cut(s) 681
AcyI GRCGYC 2 cut(s) 204, 562
AfaI GTAC 4 cut(s) 116, 616, 688, 823
AflIII ACRYGT 3 cut(s) 608, 678, 680
AgsI TTSAA 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 827
AjnI CCWGG 4 cut(s) 132, 493, 565, 709
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 99, 417
AlwI GGATC 1 cut(s) 224
AoxI GGCC 5 cut(s) 524, 596, 668, 772, 785
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 4 cut(s) 500, 572, 644, 716
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 4 cut(s) 28, 148, 541, 613
AvaII GGWCC 4 cut(s) 500, 572, 644, 716
BalI TGGCCA 1 cut(s) 774
BbrPI CACGTG 1 cut(s) 681
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 764, 893
BceAI ACGGC 4 cut(s) 405, 411, 417, 820
BciT130I CCWGG 4 cut(s) 134, 495, 567, 711
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 99, 417
BcuI ACTAGT 1 cut(s) 827
BfaI CTAG 1 cut(s) 828
BfmI CTRYAG 2 cut(s) 61, 157
BisI GCNGC 6 cut(s) 157, 190, 451, 524, 596, 668
BlsI GCNGC 6 cut(s) 158, 191, 452, 525, 597, 669
Bme1390I CCNGG 5 cut(s) 134, 495, 567, 639, 711
Bme18I GGWCC 4 cut(s) 500, 572, 644, 716
BmgT120I GGNCC 4 cut(s) 500, 572, 644, 716
BmiI GGNNCC 4 cut(s) 502, 574, 646, 718
BmrFI CCNGG 5 cut(s) 134, 495, 567, 639, 711
BmrI ACTGGG 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 221
BsaHI GRCGYC 2 cut(s) 204, 562
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 518, 590, 665
BsaXI ACNNNNNCTCC 6 cut(s) 189, 219, 735, 765, 805, 835
Bse118I RCCGGY 4 cut(s) 526, 598, 670, 787
Bse1I ACTGG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 4 cut(s) 134, 495, 567, 711
BseDI CCNNGG 3 cut(s) 518, 590, 665
BseJI GATNNNNATC 1 cut(s) 221
BseNI ACTGG 1 cut(s) 733
BseX3I CGGCCG 3 cut(s) 524, 596, 668
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 555, 667
Bsh1285I CGRYCG 8 cut(s) 252, 279, 306, 333, 387, 527, 599, 671
BshFI GGCC 5 cut(s) 526, 598, 670, 774, 787
BsiEI CGRYCG 8 cut(s) 252, 279, 306, 333, 387, 527, 599, 671
BsiSI CCGG 5 cut(s) 527, 599, 639, 671, 788
BslFI GGGAC 7 cut(s) 191, 486, 558, 621, 630, 702, 737
BsmAI GTCTC 2 cut(s) 99, 417
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 7 cut(s) 191, 486, 558, 621, 630, 702, 737
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 5 cut(s) 526, 598, 670, 774, 787
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
Bsp68I TCGCGA 1 cut(s) 555
BspANI GGCC 5 cut(s) 526, 598, 670, 774, 787
BspFNI CGCG 2 cut(s) 555, 667
BspLI GGNNCC 4 cut(s) 502, 574, 646, 718
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 4 cut(s) 526, 598, 670, 787
BsrI ACTGG 1 cut(s) 733
BssAI RCCGGY 4 cut(s) 526, 598, 670, 787
BssECI CCNNGG 3 cut(s) 518, 590, 665
BssMI GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
BssNI GRCGYC 2 cut(s) 204, 562
Bst2UI CCWGG 4 cut(s) 134, 495, 567, 711
Bst4CI ACNGT 4 cut(s) 465, 537, 662, 765
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 2 cut(s) 204, 562
BstBAI YACGTR 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 880
BstDSI CCRYGG 1 cut(s) 665
BstFNI CGCG 2 cut(s) 555, 667
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 9 cut(s) 141, 174, 219, 225, 252, 279, 306, 333, 387
BstMAI GTCTC 2 cut(s) 99, 417
BstMBI GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
BstMCI CGRYCG 8 cut(s) 252, 279, 306, 333, 387, 527, 599, 671
BstMWI GCNNNNNNNGC 4 cut(s) 450, 648, 720, 843
BstNI CCWGG 4 cut(s) 134, 495, 567, 711
BstSCI CCNGG 5 cut(s) 132, 493, 565, 637, 709
BstSFI CTRYAG 2 cut(s) 61, 157
BstUI CGCG 2 cut(s) 555, 667
BstV1I GCAGC 1 cut(s) 143
BstZI CGGCCG 3 cut(s) 524, 596, 668
BsuRI GGCC 5 cut(s) 526, 598, 670, 774, 787
BtgI CCRYGG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 53, 865
BtuMI TCGCGA 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 880
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 4 cut(s) 526, 598, 670, 787
Cfr13I GGNCC 4 cut(s) 500, 572, 644, 716
Cfr42I CCGCGG 1 cut(s) 668
CseI GACGC 2 cut(s) 193, 551
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 115, 615, 687, 822
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 889
CviQI GTAC 4 cut(s) 115, 615, 687, 822
DpnI GATC 9 cut(s) 140, 173, 218, 224, 251, 278, 305, 332, 386
DpnII GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
EaeI YGGCCR 4 cut(s) 524, 596, 668, 772
EagI CGGCCG 3 cut(s) 524, 596, 668
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 6 cut(s) 225, 231, 258, 312, 366, 393
EclXI CGGCCG 3 cut(s) 524, 596, 668
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 4 cut(s) 500, 572, 644, 716
Eco52I CGGCCG 3 cut(s) 524, 596, 668
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 1 cut(s) 681
EcoRII CCWGG 4 cut(s) 132, 493, 565, 709
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 1 cut(s) 892
FaiI YATR 7 cut(s) 187, 735, 761, 768, 780, 795, 890
FaqI GGGAC 7 cut(s) 191, 486, 558, 621, 630, 702, 737
FatI CATG 1 cut(s) 888
FauI CCCGC 2 cut(s) 303, 851
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 157, 190, 451, 524, 596, 668
Fsp4HI GCNGC 6 cut(s) 157, 190, 451, 524, 596, 668
FspBI CTAG 1 cut(s) 828
GlaI GCGC 1 cut(s) 883
GluI GCNGC 6 cut(s) 157, 190, 451, 524, 596, 668
HaeIII GGCC 5 cut(s) 526, 598, 670, 774, 787
HapII CCGG 5 cut(s) 527, 599, 639, 671, 788
HgaI GACGC 2 cut(s) 193, 551
HhaI GCGC 1 cut(s) 884
Hin1I GRCGYC 2 cut(s) 204, 562
Hin1II CATG 1 cut(s) 892
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 28
HpaII CCGG 5 cut(s) 527, 599, 639, 671, 788
HphI GGTGA 4 cut(s) 28, 148, 541, 613
Hpy166II GTNNAC 2 cut(s) 40, 676
Hpy188I TCNGA 8 cut(s) 33, 249, 276, 303, 330, 357, 384, 547
Hpy188III TCNNGA 3 cut(s) 164, 220, 554
Hpy8I GTNNAC 2 cut(s) 40, 676
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 9 cut(s) 7, 28, 53, 61, 479, 551, 623, 695, 777
HpyCH4III ACNGT 4 cut(s) 465, 537, 662, 765
HpyCH4IV ACGT 3 cut(s) 512, 608, 680
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 450, 648, 720, 843
HpySE526I ACGT 3 cut(s) 512, 608, 680
Hsp92I GRCGYC 2 cut(s) 204, 562
Hsp92II CATG 1 cut(s) 892
HspAI GCGC 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 668
Kzo9I GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 816
Lsp1109I GCAGC 1 cut(s) 143
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 828
MaeII ACGT 3 cut(s) 512, 608, 680
MaeIII GTNAC 7 cut(s) 16, 479, 623, 737, 800, 830, 838
MalI GATC 9 cut(s) 140, 173, 218, 224, 251, 278, 305, 332, 386
MboI GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
MboII GAAGA 4 cut(s) 136, 139, 239, 875
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 774
Mox20I TGGCCA 1 cut(s) 774
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 774
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 5 cut(s) 527, 599, 639, 671, 788
MspR9I CCNGG 5 cut(s) 134, 495, 567, 639, 711
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 4 cut(s) 134, 495, 567, 711
MvnI CGCG 2 cut(s) 555, 667
MwoI GCNNNNNNNGC 4 cut(s) 450, 648, 720, 843
NciI CCSGG 1 cut(s) 639
NdeII GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
NlaIII CATG 1 cut(s) 892
NlaIV GGNNCC 4 cut(s) 502, 574, 646, 718
NmeAIII GCCGAG 2 cut(s) 499, 571
NmuCI GTSAC 2 cut(s) 16, 838
NruI TCGCGA 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 559
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 6 cut(s) 158, 191, 452, 525, 597, 669
Ple19I CGATCG 5 cut(s) 252, 279, 306, 333, 387
PmaCI CACGTG 1 cut(s) 681
PmlI CACGTG 1 cut(s) 681
Ppu21I YACGTR 1 cut(s) 681
Psp1406I AACGTT 1 cut(s) 512
Psp6I CCWGG 4 cut(s) 132, 493, 565, 709
PspCI CACGTG 1 cut(s) 681
PspGI CCWGG 4 cut(s) 132, 493, 565, 709
PspN4I GGNNCC 4 cut(s) 502, 574, 646, 718
PspPI GGNCC 4 cut(s) 500, 572, 644, 716
PstI CTGCAG 1 cut(s) 161
PvuI CGATCG 5 cut(s) 252, 279, 306, 333, 387
RruI TCGCGA 1 cut(s) 555
RsaI GTAC 4 cut(s) 116, 616, 688, 823
RsaNI GTAC 4 cut(s) 115, 615, 687, 822
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 668
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 6 cut(s) 157, 190, 451, 524, 596, 668
Sau3AI GATC 9 cut(s) 138, 171, 216, 222, 249, 276, 303, 330, 384
Sau96I GGNCC 4 cut(s) 500, 572, 644, 716
ScrFI CCNGG 5 cut(s) 134, 495, 567, 639, 711
SexAI ACCWGGT 1 cut(s) 132
SfcI CTRYAG 2 cut(s) 61, 157
Sfr303I CCGCGG 1 cut(s) 668
SgrBI CCGCGG 1 cut(s) 668
SinI GGWCC 4 cut(s) 500, 572, 644, 716
SmiMI CAYNNNNRTG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 827
Sse9I AATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 828
StyD4I CCNGG 5 cut(s) 132, 493, 565, 637, 709
TaaI ACNGT 4 cut(s) 465, 537, 662, 765
TaiI ACGT 3 cut(s) 515, 611, 683
TaqI TCGA 7 cut(s) 219, 225, 252, 279, 306, 333, 387
TasI AATT 1 cut(s) 89
TauI GCSGC 5 cut(s) 192, 453, 526, 598, 670
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 53, 865
TseFI GTSAC 2 cut(s) 16, 838
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 2 cut(s) 16, 838
TspGWI ACGGA 4 cut(s) 399, 632, 704, 756
TspRI CASTG 2 cut(s) 53, 865
VpaK11BI GGWCC 4 cut(s) 500, 572, 644, 716
XapI RAATTY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.