Rh5BG006800

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000455
Physical Location & Seq
Forward (+)
490560 .. 492218
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG006800.1

Sequence Viewer

Length: 585 bp
ATGTACGACGAGAAGAACAACCTGGTGATCATCCAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTACAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCCGAGAAGCCCAAGCCAAAGGAGCCCGAGAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAGGAGAAACCCAAAGAGCCCGAGAAACCTAAAGAGAAACCCAAAGAGCCCGAGAAGCCGAAGGTAGCTCCACCTGCGGTGATCGTTAACCCGTGTTGTATGGAATGTTACGGAGGGCATCCTGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGACCTGCCCCTTACATAGAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAACTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

194

Amino Acids

21.84

Weight (kDa)

8.53

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 2 cut(s) 361, 448
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 3 cut(s) 356, 498, 535
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 5, 458
AhlI ACTAGT 1 cut(s) 518
AjnI CCWGG 2 cut(s) 21, 400
AluBI AGCT 2 cut(s) 73, 347
AluI AGCT 2 cut(s) 73, 347
Ama87I CYCGRG 4 cut(s) 122, 146, 299, 329
AoxI GGCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 95, 575
AspS9I GGNCC 2 cut(s) 407, 437
AsuHPI GGTGA 2 cut(s) 37, 370
AvaI CYCGRG 4 cut(s) 122, 146, 299, 329
AvaII GGWCC 2 cut(s) 407, 437
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 3 cut(s) 147, 300, 330
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 455, 584
BceAI ACGGC 1 cut(s) 511
BciT130I CCWGG 2 cut(s) 23, 402
BclI TGATCA 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 2 cut(s) 361, 448
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 23, 402
Bme18I GGWCC 2 cut(s) 407, 437
BmeT110I CYCGRG 4 cut(s) 122, 146, 299, 329
BmgT120I GGNCC 2 cut(s) 407, 437
BmiI GGNNCC 7 cut(s) 94, 144, 177, 207, 237, 267, 409
BmrFI CCNGG 2 cut(s) 23, 402
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 114, 406
BmuI ACTGGG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 23, 402
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 30, 397
BseNI ACTGG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 92
BsiHKCI CYCGRG 4 cut(s) 122, 146, 299, 329
BsiSI CCGG 5 cut(s) 179, 209, 239, 269, 479
BslFI GGGAC 2 cut(s) 80, 393
BsmFI GGGAC 2 cut(s) 80, 393
BsnI GGCC 1 cut(s) 478
BsoBI CYCGRG 4 cut(s) 122, 146, 299, 329
Bsp1286I GDGCHC 4 cut(s) 123, 147, 300, 330
Bsp143I GATC 5 cut(s) 27, 60, 111, 160, 360
BspACI CCGC 3 cut(s) 356, 498, 535
BspANI GGCC 1 cut(s) 478
BspLI GGNNCC 7 cut(s) 94, 144, 177, 207, 237, 267, 409
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 2 cut(s) 361, 448
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 5 cut(s) 27, 60, 111, 160, 360
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 23, 402
Bst4CI ACNGT 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 30, 397
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 575
BstKTI GATC 5 cut(s) 30, 63, 114, 163, 363
BstMBI GATC 5 cut(s) 27, 60, 111, 160, 360
BstNI CCWGG 2 cut(s) 23, 402
BstSCI CCNGG 2 cut(s) 21, 400
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 478
BtsCI GGATG 2 cut(s) 30, 397
BtsIMutI CAGTG 1 cut(s) 556
BveI ACCTGC 2 cut(s) 361, 448
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 2 cut(s) 95, 575
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 407, 437
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 4, 457
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 1 cut(s) 580
CviQI GTAC 2 cut(s) 4, 457
DdeI CTNAG 1 cut(s) 279
DinI GGCGCC 1 cut(s) 94
DpnI GATC 5 cut(s) 29, 62, 113, 162, 362
DpnII GATC 5 cut(s) 27, 60, 111, 160, 360
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 3 cut(s) 147, 300, 330
Eco47I GGWCC 2 cut(s) 407, 437
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 4 cut(s) 122, 146, 299, 329
EcoRII CCWGG 2 cut(s) 21, 400
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 3 cut(s) 147, 300, 330
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 583
FaiI YATR 8 cut(s) 76, 380, 426, 452, 471, 486, 513, 581
FaqI GGGAC 2 cut(s) 80, 393
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 542
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 2 cut(s) 17, 384
FriOI GRGCYC 3 cut(s) 147, 300, 330
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 519
GlaI GCGC 2 cut(s) 94, 574
GluI GCNGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 478
HapII CCGG 5 cut(s) 179, 209, 239, 269, 479
HhaI GCGC 2 cut(s) 95, 575
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 2 cut(s) 93, 573
HinP1I GCGC 2 cut(s) 93, 573
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 5 cut(s) 179, 209, 239, 269, 479
HphI GGTGA 2 cut(s) 37, 370
Hpy166II GTNNAC 2 cut(s) 367, 437
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 53, 109
Hpy8I GTNNAC 2 cut(s) 367, 437
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 334, 468
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 2 cut(s) 93, 573
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 5 cut(s) 27, 60, 111, 160, 360
LmnI GCTCC 6 cut(s) 142, 175, 205, 235, 265, 352
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 114, 406
MabI ACCWGGT 1 cut(s) 21
MaeI CTAG 1 cut(s) 519
MaeIII GTNAC 5 cut(s) 386, 428, 491, 521, 529
MalI GATC 5 cut(s) 29, 62, 113, 162, 362
MboI GATC 5 cut(s) 27, 60, 111, 160, 360
MboII GAAGA 2 cut(s) 25, 566
MhlI GDGCHC 4 cut(s) 123, 147, 300, 330
Mly113I GGCGCC 1 cut(s) 93
MnlI CCTC 3 cut(s) 80, 386, 498
MseI TTAA 2 cut(s) 99, 366
MslI CAYNNNNRTG 2 cut(s) 35, 402
MspI CCGG 5 cut(s) 179, 209, 239, 269, 479
MspR9I CCNGG 2 cut(s) 23, 402
MvaI CCWGG 2 cut(s) 23, 402
NarI GGCGCC 1 cut(s) 93
NdeII GATC 5 cut(s) 27, 60, 111, 160, 360
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 7 cut(s) 94, 144, 177, 207, 237, 267, 409
NmuCI GTSAC 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 21, 400
PspGI CCWGG 2 cut(s) 21, 400
PspN4I GGNNCC 7 cut(s) 94, 144, 177, 207, 237, 267, 409
PspPI GGNCC 2 cut(s) 407, 437
PstI CTGCAG 1 cut(s) 50
RsaI GTAC 2 cut(s) 5, 458
RsaNI GTAC 2 cut(s) 4, 457
RseI CAYNNNNRTG 2 cut(s) 35, 402
SaqAI TTAA 2 cut(s) 99, 366
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 5 cut(s) 27, 60, 111, 160, 360
Sau96I GGNCC 2 cut(s) 407, 437
ScrFI CCNGG 2 cut(s) 23, 402
SduI GDGCHC 4 cut(s) 123, 147, 300, 330
SetI ASST 8 cut(s) 24, 75, 91, 310, 345, 349, 355, 442
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 2 cut(s) 114, 406
SfcI CTRYAG 1 cut(s) 46
SfoI GGCGCC 1 cut(s) 94
SinI GGWCC 2 cut(s) 407, 437
SmiMI CAYNNNNRTG 2 cut(s) 35, 402
SpeI ACTAGT 1 cut(s) 518
SsiI CCGC 3 cut(s) 356, 498, 535
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 21, 400
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 108
Tru1I TTAA 2 cut(s) 99, 366
Tru9I TTAA 2 cut(s) 99, 366
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 529
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 407, 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.